PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00490g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 317aa MW: 35939.2 Da PI: 4.4297 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 2e-09 | 134 | 177 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ErrRR r+++++ Lr+l+P+ +K++Ka+i A+ Y+ Lq Peaxi162Scf00490g00018.1 134 ISERRRRGRMKEKLYVLRSLVPNI-----TKMDKASIIGDAILYVEGLQ 177 67*********************7.....7***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-15 | 125 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.418 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-15 | 129 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.54E-10 | 129 | 179 | No hit | No description |
SMART | SM00353 | 2.8E-12 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-7 | 134 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034756 | Biological Process | regulation of iron ion transport | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0071369 | Biological Process | cellular response to ethylene stimulus | ||||
GO:0071732 | Biological Process | cellular response to nitric oxide | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MENTNVNDVE LINFIDEANF EQFIELIRGE NADPIAKFCP NYNCEAGCFD PQMADYVTFE 60 PTQTDWNIAT NMSYDPISVY ANSLPGEIKL SDDHDDEEEE EDDDDNDDEG SSGTTTTNTT 120 MKRSKRTDRS RTLISERRRR GRMKEKLYVL RSLVPNITKM DKASIIGDAI LYVEGLQTQA 180 KRLKTEIVDL ESSLKETNNN QGPFQNAKKF NITSHYPAIK RITTMDVFQV EENGYYVKLV 240 CNKGRQVAVS LFKALESLTG LNIQTSNLAT SADHYILTFT LQVRDCKVDM NLANLKIWIA 300 SAFLNQGFDF EVLPLAG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Essential protein involved in iron uptake responses. Regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation. Confers enhanced iron mobilization responses at low iron supply. {ECO:0000269|PubMed:15539473, ECO:0000269|PubMed:15556641, ECO:0000269|PubMed:16117851}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In roots by iron deficiency. Repressed by cytokinins. Induced by cold, UV, ethylene (ACC), jasmonic acid (JA), flagellin, and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15531708, ECO:0000269|PubMed:15539473, ECO:0000269|PubMed:15556641, ECO:0000269|PubMed:18397377}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019258109.1 | 1e-142 | PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like | ||||
Swissprot | Q0V7X4 | 2e-86 | FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR | ||||
TrEMBL | A0A314LHV3 | 1e-141 | A0A314LHV3_NICAT; Transcription factor fer-like iron deficiency-induced transcription factor | ||||
STRING | XP_009630561.1 | 1e-141 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3782 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28160.1 | 4e-66 | FER-like regulator of iron uptake |