PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00488g00814.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ARF

Protein Properties

Length: 691aa MW: 76279.1 Da PI: 5.2369

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00488g00814.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.8	2.1e-23	131	231	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f k+lt+sd+++ g +++p+ +ae++ + ++ +t+ +d + ++W++++iyr++++r++lt+GW++Fv+ ++L +gD+ Peaxi162Scf00488g00814.1 131 FTKTLTQSDANNGGGFSVPRYCAETIfprldfSADP-AAQTILAKDVHEETWKFRHIYRGTPRRHLLTTGWSSFVNNKKLVAGDS 214 89***************************84444.4569**************************************** PP EEEEE-SSSEE..EEEEE- CS B3 80 vvFkldgrsefelvvkvfr 98 vvF + +++ l+v+++r Peaxi162Scf00488g00814.1 215 VVFLR--ADNGDLCVGIRR 231 3..477888**98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-36	122	234	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-28	126	233	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.03E-21	130	231	No hit	No description
SMART	SM01019	4.6E-22	131	233	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.83	131	233	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.4E-22	131	231	IPR003340	B3 DNA binding domain
Pfam	PF06507	1.5E-28	292	374	IPR010525	Auxin response factor
PROSITE profile	PS51745	16.106	599	679	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
NLVDFKMITF LDSMDRVKEE EDKCVDSKLW HASAGSMVQI PSVNSIVFYF PQGHAEHACG 60 SVEFRSDTRI PPYIRCRVLG IKYMADQETD EVFAKIRLTP VSGNEVEFAD DGVVGISGLD 120 RSDNPDKPAI FTKTLTQSDA NNGGGFSVPR YCAETIFPRL DFSADPAAQT ILAKDVHEET 180 WKFRHIYRGT PRRHLLTTGW SSFVNNKKLV AGDSVVFLRA DNGDLCVGIR RVKRGLVGGP 240 ETSSGWNPPG ANFVVPYGGF SAFLRDDENK LMNSSGRLMN RGKVKAESVI EAANLAASGR 300 PFEVTFYPRA STPEFFVKAS LVMEASQIRW CSGMRFKMAF ETEDSMVSWF MGTICSVQVA 360 DPILWPDSPW RLLQVTWDEP DLLQNVKCVS PWLVELVSNM SNVHLSPFSP PSKKLRLPQH 420 SDFPLDGHLP MLGFPGNHLL RPSGPFGCLP NDTPAGMQGA RHSQYDFSLA DFHLNKLQSS 480 LFPVGFPLLD QAAAPSNSTM IPNPSSSDDM SCLLTIGSST QTVKKSDCEK APQLVLFGQP 540 ILTEQQLSLS SSGDTVSPVR AGNSSSDGNA DKVGNSSDES GSAFDHRGLP FHSEQRVEIG 600 HCKVFIESED VGRTLDLSVL ESYDELYRKL ADMFGIEISE VLNRVLYRDI SDVEKQLGDE 660 PFSDFMKTAR RLTILADASS DNVGSKEYNN K

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

NLVDFKMITF LDSMDRVKEE EDKCVDSKLW HASAGSMVQI PSVNSIVFYF PQGHAEHACG  60
SVEFRSDTRI PPYIRCRVLG IKYMADQETD EVFAKIRLTP VSGNEVEFAD DGVVGISGLD  120
RSDNPDKPAI FTKTLTQSDA NNGGGFSVPR YCAETIFPRL DFSADPAAQT ILAKDVHEET  180
WKFRHIYRGT PRRHLLTTGW SSFVNNKKLV AGDSVVFLRA DNGDLCVGIR RVKRGLVGGP  240
ETSSGWNPPG ANFVVPYGGF SAFLRDDENK LMNSSGRLMN RGKVKAESVI EAANLAASGR  300
PFEVTFYPRA STPEFFVKAS LVMEASQIRW CSGMRFKMAF ETEDSMVSWF MGTICSVQVA  360
DPILWPDSPW RLLQVTWDEP DLLQNVKCVS PWLVELVSNM SNVHLSPFSP PSKKLRLPQH  420
SDFPLDGHLP MLGFPGNHLL RPSGPFGCLP NDTPAGMQGA RHSQYDFSLA DFHLNKLQSS  480
LFPVGFPLLD QAAAPSNSTM IPNPSSSDDM SCLLTIGSST QTVKKSDCEK APQLVLFGQP  540
ILTEQQLSLS SSGDTVSPVR AGNSSSDGNA DKVGNSSDES GSAFDHRGLP FHSEQRVEIG  600
HCKVFIESED VGRTLDLSVL ESYDELYRKL ADMFGIEISE VLNRVLYRDI SDVEKQLGDE  660
PFSDFMKTAR RLTILADASS DNVGSKEYNN K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-78	9	402	32	395	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016542732.1	0.0	PREDICTED: auxin response factor 18-like
Swissprot	Q653H7	0.0	ARFR_ORYSJ; Auxin response factor 18
TrEMBL	A0A2G2VZR8	0.0	A0A2G2VZR8_CAPBA; Auxin response factor
TrEMBL	A0A2G3BJ95	0.0	A0A2G3BJ95_CAPCH; Auxin response factor
STRING	Solyc09g007810.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA592	24	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	auxin response factor 16

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Huang J,Li Z,Zhao D Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep, 2016. 6: p. 29938 [PMID:27444058]