PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00475g00712.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ERF

Protein Properties

Length: 62aa MW: 6974.97 Da PI: 8.9892

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00475g00712.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.7	3.8e-10	3	40	16	55
AP2 16 vAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +Ae rdp + k +r +lg++ t+e+A a+++a+ k++g Peaxi162Scf00475g00712.1 3 AAETRDP---NmKGARLWLGTYETPEDATLAYDQAAFKIRG 40 7998998...7677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	16.212	1	48	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-15	1	54	IPR001471	AP2/ERF domain
CDD	cd00018	6.18E-19	2	50	No hit	No description
SuperFamily	SSF54171	9.15E-16	2	49	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.7E-21	2	49	IPR001471	AP2/ERF domain
Pfam	PF00847	7.8E-6	4	40	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MFAAETRDPN MKGARLWLGT YETPEDATLA YDQAAFKIRG SKARLNFPHL IGSDIAKYKV 60 ID

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-19	2	53	17	68	ATERF1
3gcc_A	2e-19	2	53	17	68	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:11950980}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269\|PubMed:11950980, ECO:0000269\|PubMed:12068110}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB828151	4e-32	AB828151.1 Nicotiana tabacum ERF168 mRNA for ethylene response factor 168, complete cds.
GenBank	AB828152	4e-32	AB828152.1 Nicotiana tabacum ERF163 mRNA for ethylene response factor 163, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015088985.1	7e-29	ethylene-responsive transcription factor 13-like
Swissprot	Q8L9K1	5e-24	ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBL	A0A2G3DF01	2e-27	A0A2G3DF01_CAPCH; Ethylene-responsive transcription factor 2
STRING	Solyc01g090320.2.1	2e-27	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	2e-26	ethylene-responsive element binding factor 13

Publications ? help Back to Top
Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum. Plant Physiol., 2007. 145(4): p. 1588-99 [PMID:17965181] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]