PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00463g10017.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 329aa    MW: 36643.9 Da    PI: 4.7944
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00463g10017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-183281255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Peaxi162Scf00463g10017.1 32 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDQAACLLRG 81
                              799******.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-193290IPR016177DNA-binding domain
PfamPF008477.7E-133281IPR001471AP2/ERF domain
PROSITE profilePS5103219.5463289IPR001471AP2/ERF domain
SMARTSM003804.1E-363295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-273289IPR001471AP2/ERF domain
CDDcd000183.39E-313288No hitNo description
PRINTSPR003671.2E-73344IPR001471AP2/ERF domain
PRINTSPR003671.2E-75571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEINFQKQQQ KEAKKATKLK GRNSRSNGGN NKFVGVRQRP SGRWVAEIKD TTQKIRMWLG  60
TFETAEEAAR AYDQAACLLR GSNTRTNFVT RVSSDSPLAS RIRNLLNSKK NSKQRSHDDK  120
EQSSDSSTSS TDHNIIQNSA TSNNSNNSSP VSTGDSNNSD DSVTSQNIQQ SHHIDQDATQ  180
ADHNMACDQA IVSCNQELLL QESQLFDDAY KPDLSSCSDE LDMGSSSNPY ASNSFSFTNS  240
SVQPEISWNF AQHGYEFAQE LLLDHPRSVV FEGTADDEMG SLTEFERMKV ERSISASLYA  300
VNGVQEYIQT FYDPSESLWD LPPLCSLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153394668ATERF1
3gcc_A2e-153394668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4662835e-48AM466283.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X245563.19, clone ENTAV 115.
GenBankFQ3965865e-48FQ396586.1 Vitis vinifera clone SS0AEB9YH10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757570.11e-150PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_016475325.11e-150PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A1S4AF601e-149A0A1S4AF60_TOBAC; ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A1U7V7491e-149A0A1U7V749_NICSY; ethylene-responsive transcription factor RAP2-11-like
STRINGXP_009757570.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-29related to AP2 11