PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00459g00510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | CO-like | ||||||||
Protein Properties | Length: 356aa MW: 39452.9 Da PI: 6.0523 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.9 | 3.6e-07 | 11 | 43 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ ++ fC+ ++ +lC C +++H Peaxi162Scf00459g00510.1 11 KLCDSCKTTSATVFCRADSAFLCLGCDSKIHAA 43 68******99*********************54 PP | |||||||
2 | zf-B_box | 28.1 | 4.2e-09 | 53 | 98 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H+++p+ Peaxi162Scf00459g00510.1 53 VWVCEVCEQAPATVTCKADAAALCVTCDRDIHSAnplarrHERIPV 98 689*****************************66889999999885 PP | |||||||
3 | CCT | 70.5 | 4.1e-24 | 293 | 336 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Peaxi162Scf00459g00510.1 293 REARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 336 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.182 | 8 | 55 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.5E-10 | 8 | 55 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-5 | 11 | 50 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.45E-6 | 12 | 55 | No hit | No description |
PROSITE profile | PS50119 | 10.793 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.4E-7 | 53 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.94E-8 | 54 | 98 | No hit | No description |
SMART | SM00336 | 1.2E-10 | 56 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.896 | 293 | 335 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.3E-18 | 293 | 335 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGSESWSLTA KLCDSCKTTS ATVFCRADSA FLCLGCDSKI HAANKLASRH ARVWVCEVCE 60 QAPATVTCKA DAAALCVTCD RDIHSANPLA RRHERIPVVP FYDSAIAKSH GGSEDDKYLD 120 VNVVEAEEEA EAASWILPTP NNNNNNNNNN NNNNTTTKGI KSGEEVEYKS ADYLFNDMDS 180 YLDMDFMSCD KKPHIIHQQH YCSDGVVPVQ CKNEITQFQG PVVDGFPTYE IDFPGSKPYL 240 YNFSSQSISQ SVSSSSLDVG VVPDHSAMTD VSNTYVTNPS ADAVPNPVSG LDREARVMRY 300 REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTEIEI DSFIAADASY GVVPSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009758697.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like | ||||
Refseq | XP_016478497.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 1e-105 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A1S4AP33 | 0.0 | A0A1S4AP33_TOBAC; zinc finger protein CONSTANS-LIKE 4-like | ||||
TrEMBL | A0A1U7URH8 | 0.0 | A0A1U7URH8_NICSY; zinc finger protein CONSTANS-LIKE 4-like | ||||
STRING | XP_009758697.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-103 | CONSTANS-like 4 |