PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00452g00412.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 315aa    MW: 35275.5 Da    PI: 6.9133
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00452g00412.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.8e-171663148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W+ eEd++l+  ++++G g+W++ ++  g+ R++k+c++rw +yl
  Peaxi162Scf00452g00412.1 16 KGPWSSEEDLRLITFIQKHGHGNWRSLPKQAGLLRCGKSCRLRWINYL 63
                              79******************************99************97 PP

2Myb_DNA-binding51.32.7e-1669114148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T++E+  +v++++ +G++ W++Ia++++ gRt++++k+ w+++l
  Peaxi162Scf00452g00412.1  69 RGNFTPQEEATIVKLHQSFGNK-WSKIASYLP-GRTDNEIKNVWNTHL 114
                               89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-24766IPR009057Homeodomain-like
PROSITE profilePS5129416.7081163IPR017930Myb domain
SuperFamilySSF466898.24E-3114110IPR009057Homeodomain-like
SMARTSM007173.0E-131565IPR001005SANT/Myb domain
PfamPF002491.7E-151663IPR001005SANT/Myb domain
CDDcd001674.47E-101863No hitNo description
PROSITE profilePS5129424.72264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2767118IPR009057Homeodomain-like
SMARTSM007171.4E-1468116IPR001005SANT/Myb domain
PfamPF002494.1E-1569114IPR001005SANT/Myb domain
CDDcd001674.84E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGKGRAPCCD KSKVKKGPWS SEEDLRLITF IQKHGHGNWR SLPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTPQEEATI VKLHQSFGNK WSKIASYLPG RTDNEIKNVW NTHLKKRLMK  120
KIDGNQAKDG RSCVSPPFSP SSSTSVVSHT NWSQDISTKA NEVEFKDDML AEKEPKEATK  180
SCSPTTSYGS NLSNLSQVEI SSPKGLDMDN WILSPKVHDI HDDGVIEIPS MESDIDFWDM  240
LDILDPSPTT TTTTSNSDSK QDNQPVCQGV SDSECQKWLR YLENELGLSQ STGANCYECT  300
DAVTSQDKEA HPFTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26161184105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-26161184105C-Myb DNA-Binding Domain
1msf_C1e-26161184105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579575.11e-124PREDICTED: myb-related protein 308-like
TrEMBLA0A2G2Z6A01e-122A0A2G2Z6A0_CAPAN; Myb-related protein
STRINGXP_009612238.11e-116(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.16e-78myb domain protein 58