PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00452g00412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 315aa MW: 35275.5 Da PI: 6.9133 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.8e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l+ ++++G g+W++ ++ g+ R++k+c++rw +yl Peaxi162Scf00452g00412.1 16 KGPWSSEEDLRLITFIQKHGHGNWRSLPKQAGLLRCGKSCRLRWINYL 63 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ +v++++ +G++ W++Ia++++ gRt++++k+ w+++l Peaxi162Scf00452g00412.1 69 RGNFTPQEEATIVKLHQSFGNK-WSKIASYLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.708 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-31 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.47E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.722 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-27 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.84E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MGKGRAPCCD KSKVKKGPWS SEEDLRLITF IQKHGHGNWR SLPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTPQEEATI VKLHQSFGNK WSKIASYLPG RTDNEIKNVW NTHLKKRLMK 120 KIDGNQAKDG RSCVSPPFSP SSSTSVVSHT NWSQDISTKA NEVEFKDDML AEKEPKEATK 180 SCSPTTSYGS NLSNLSQVEI SSPKGLDMDN WILSPKVHDI HDDGVIEIPS MESDIDFWDM 240 LDILDPSPTT TTTTSNSDSK QDNQPVCQGV SDSECQKWLR YLENELGLSQ STGANCYECT 300 DAVTSQDKEA HPFTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-26 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-26 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579575.1 | 1e-124 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | A0A2G2Z6A0 | 1e-122 | A0A2G2Z6A0_CAPAN; Myb-related protein | ||||
STRING | XP_009612238.1 | 1e-116 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 6e-78 | myb domain protein 58 |