PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00452g00037.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 554aa    MW: 61860.5 Da    PI: 4.6894
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00452g00037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.32.9e-1001705471374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalkl 83 
                               lv+lLl+cAeav  +d++l  +lL+++   ++p gd++qR+  +f+ +L++rl+  +  + + a  ++ + +  + +e+  a + 
  Peaxi162Scf00452g00037.1 170 LVHLLLACAEAVGCRDTRLSYSLLTQIWPAVTPFGDSLQRVSYCFALGLQSRLMLlHHRNAAGATgATLTGEAASRAEKREACHW 254
                               68***************************************************98433333333313333333447778888888 PP

                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisq.GlQWpaLlqaLasRpegpp..slRiTgvgspesg...skeeleetg 162
                               +++++P++ f++++aN aI +a++g+e++HiiD+++ +  lQWp+L+ +L+++++ pp   +RiT +   +++    +  l+++ 
  Peaxi162Scf00452g00037.1 255 LHQTTPYIAFGFMAANDAICQAAKGKECLHIIDLGMIHnLLQWPSLITTLTTQAGTPPprLIRITSIIGDTQDlleVEAGLRSLM 339
                               **********************************9665168*************55444689****98878778999999***** PP

                      GRAS 163 erLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
                               e  a + ++ ++++ef+v+ +  + + ++ e+L+v++gEal+Vn+v+qlh+ ++es  + +   ++L+++k+l P++++vveq+a
  Peaxi162Scf00452g00037.1 340 EEVAAVSSSGNIRLEFQVIKEPvTASLFTREKLDVREGEALIVNSVMQLHKYVKESRGSLK---TILQAIKKLVPTLLTVVEQDA 421
                               ******************8444589999*************************88777666...9******************** PP

                      GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                               +hn++ Fl+rfle+++yysa+fdslea+lpr+s +rik+E+   ++ei+n+va eg++r+erhe++ +Wr++l++aGF+ v l+ 
  Peaxi162Scf00452g00037.1 422 NHNGPFFLARFLESIHYYSAIFDSLEASLPRDSTTRIKIEKCHYAEEIRNIVAYEGSDRIERHERADQWRRQLGRAGFQVVGLK- 505
                               *********************************************************************************995. PP

                      GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 ++qa+++l+ ++sdgy++ +++g+l+lgWk+rp++++SaW+
  Peaxi162Scf00452g00037.1 506 -CMSQAQTMLSVYGSDGYTLASDKGCLLLGWKGRPIMFASAWQ 547
                               .89***************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.363144529IPR005202Transcription factor GRAS
PfamPF035141.0E-97170547IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MNSEWVLSNE NYNQDFAIRQ FCAAARSFEH EQQHAQNDCS STPDYLEASS QEGQDFVDSF  60
FNINDYCYVD NNNDIGTGNL PLDHQLNHDN EDLGEFTSMM LNDSYHGNLS ILTDELEPMY  120
TVMEACSSSD DLIGADQRPF DTEMPSEEDE DDEIKATISH DNVVDQGLQL VHLLLACAEA  180
VGCRDTRLSY SLLTQIWPAV TPFGDSLQRV SYCFALGLQS RLMLLHHRNA AGATGATLTG  240
EAASRAEKRE ACHWLHQTTP YIAFGFMAAN DAICQAAKGK ECLHIIDLGM IHNLLQWPSL  300
ITTLTTQAGT PPPRLIRITS IIGDTQDLLE VEAGLRSLME EVAAVSSSGN IRLEFQVIKE  360
PVTASLFTRE KLDVREGEAL IVNSVMQLHK YVKESRGSLK TILQAIKKLV PTLLTVVEQD  420
ANHNGPFFLA RFLESIHYYS AIFDSLEASL PRDSTTRIKI EKCHYAEEIR NIVAYEGSDR  480
IERHERADQW RRQLGRAGFQ VVGLKCMSQA QTMLSVYGSD GYTLASDKGC LLLGWKGRPI  540
MFASAWQVHN VASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4917754626378Protein SCARECROW
5b3h_A4e-4917754625377Protein SCARECROW
5b3h_D4e-4917754625377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768414.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_016464602.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S3ZJT60.0A0A1S3ZJT6_TOBAC; DELLA protein RGL1-like
TrEMBLA0A1U7W1A50.0A0A1U7W1A5_NICSY; DELLA protein RGL1-like
STRINGXP_009768414.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140671113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-73RGA-like 1