PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00451g00059.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 293aa    MW: 33066 Da    PI: 8.144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00451g00059.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.1e-101440127
                              TSSS-HHHHHHHHHHHHHTTTT-HHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktI 27
                              +g+WT+eEd++l+ +++q+G g+W++ 
  Peaxi162Scf00451g00059.1 14 KGPWTPEEDQKLLAYIEQHGHGSWRAL 40
                              79**********************986 PP

2Myb_DNA-binding50.74e-1685130148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T++E++ +++++++lG++ W++Ia ++  +Rt++++k++w+++l
  Peaxi162Scf00451g00059.1  85 RGKFTQQEEQTIIQLHALLGNR-WSAIATHLF-KRTDNEIKNYWNTHL 130
                               89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-24582IPR009057Homeodomain-like
PROSITE profilePS5129411.498979IPR017930Myb domain
SuperFamilySSF466895.09E-2711126IPR009057Homeodomain-like
SMARTSM007171.2E-101381IPR001005SANT/Myb domain
PfamPF002494.3E-81440IPR001005SANT/Myb domain
CDDcd001671.72E-81679No hitNo description
PROSITE profilePS5129426.37280134IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2683134IPR009057Homeodomain-like
SMARTSM007171.4E-1684132IPR001005SANT/Myb domain
PfamPF002492.8E-1585130IPR001005SANT/Myb domain
CDDcd001679.28E-1287130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE QHGHGSWRAL PIKAASSSIT YTAYGFDDLQ  60
FVGLQRCGKS CRLRWTNYLR PDIKRGKFTQ QEEQTIIQLH ALLGNRWSAI ATHLFKRTDN  120
EIKNYWNTHL KKRLTKMGID PVTHKPMNDT LLSTNDNVQS KNSANLSHIA QWESARLEAE  180
ARLVKQSKFH SYKLDTPRTS TFFDHYSSQE LLTPSSSSSH LKNLMPVTSG LQDFNFVERS  240
TGFLLCTSAD GNLSSGGMDS DSSGNASEQC EDNNYWNSIL DLVNSSPTES TMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231213425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218879.11e-110transcription factor MYB16
SwissprotQ9LXF11e-104MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A328D8Q91e-114A0A328D8Q9_9ASTE; Uncharacterized protein
TrEMBLA0A484MUT01e-115A0A484MUT0_9ASTE; Uncharacterized protein
STRINGAES747481e-108(Medicago truncatula)
STRINGXP_009624863.11e-108(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.21e-101myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]