PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00450g00513.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 357aa MW: 40816.6 Da PI: 10.0114 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.8e-19 | 87 | 136 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a+++ + +++ge Peaxi162Scf00450g00513.1 87 YRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFITAEDAARAYDKKAIEFRGE 136 9*******.**********7.....337*************************997 PP | |||||||
2 | AP2 | 60.2 | 4.8e-19 | 220 | 269 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a+++ + +++ge Peaxi162Scf00450g00513.1 220 YRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFITAEDAARAYDKKAIEFRGE 269 9*******.**********7.....337*************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-21 | 86 | 145 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-36 | 86 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-32 | 86 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.736 | 86 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 87 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.2E-11 | 87 | 136 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.23E-28 | 87 | 145 | No hit | No description |
PRINTS | PR00367 | 5.2E-11 | 109 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 219 | 278 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-36 | 219 | 282 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-32 | 219 | 277 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.736 | 219 | 276 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.2E-11 | 220 | 269 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.23E-28 | 220 | 278 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MTNKLTQDQE SYYIVSALTH VISGADRRTD GEAAQLLREV QNASTTTSAS TYLTCHIATT 60 TSFQVKRDNN LALQNGKRRR RNTKKEYRGV RQRPWGKWAA EIRDPHKAQR VWLGTFITAE 120 DAARAYDKKA IEFRGEKAKT NFPISEYTPT LTHVISGADR RTDGEAAQLL REVQNASTTT 180 SASTYLTCHI ATTTSFQVKR DNNLALQNGK RRRRNTKKEY RGVRQRPWGK WAAEIRDPHK 240 AQRVWLGTFI TAEDAARAYD KKAIEFRGEK AKTNFPISEY TPSTDTATTT IVTDEKKPMV 300 VEKYKHEMSG EFKVENNVVN GEVAMADHDN GESSKQHFDD FWDTLEEDRL VKWITKD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 85 | 277 | 4 | 64 | ATERF1 |
3gcc_A | 2e-21 | 85 | 277 | 4 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269|PubMed:16133218, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019233022.1 | 3e-92 | PREDICTED: ethylene-responsive transcription factor ERF110-like | ||||
Swissprot | Q9LYU3 | 1e-27 | EF113_ARATH; Ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | A0A1J6KC50 | 8e-91 | A0A1J6KC50_NICAT; Ethylene-responsive transcription factor erf109 | ||||
STRING | XP_009587871.1 | 9e-93 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13330.1 | 8e-30 | related to AP2 6l |