PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00444g00001.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

GRAS

Protein Properties

Length: 659aa MW: 72378.4 Da PI: 6.7787

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00444g00001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	348.9	8e-107	287	659	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 + ++e+A+a+s+g++ a ++L+rls+ a+ +g++ qRl+ay++ AL++r++ + p+ e +s e++ +++ ++ev Peaxi162Scf00444g00001.1 287 QSIIEAATAISDGKNDVAVEILTRLSQVANVRGSSDQRLTAYMVSALRSRVNP----TDYPPPVME---LHSREHVDSTQNLYEV 364 6789**********************************************9....222233333...35899999999* PP GRAS 88 sPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetger 164 sP++k+++++aN aIleav+++ ++vH+iDfdi+qG+Q++ Ll+aLa+ ++pp l+iT++ ++ g ++l+++g Peaxi162Scf00444g00001.1 365 SPCFKLGFMAANLAILEAVAEQplnNKVHVIDFDIGQGGQYLHLLHALAAAMksdsnKPPPVLKITAFTDQVGGVDNRLNSIGLE 449 *****************9999*******************9544347777899*****8888******* PP GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 L+ +A+++gv + fnv ++ ++++++ ++L ++ +EalaVn++++l+rl+desv++e+ rde+L+ vk+lsPkvv++veqe++ n Peaxi162Scf00444g00001.1 450 LKALASKIGVCLFFNV-MSCNITEMSRDKLGIEADEALAVNFAFKLYRLPDESVTTENLRDELLRRVKGLSPKVVTMVEQELNGN 533 ***********9.7889************************************************************ PP GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 +++Fl+r+ ea+ yy alfdsl+a+++r++ er+k+E l+r+ n vaceg++r+er+e ++kWr+r+++aGF + p+s+ +a Peaxi162Scf00444g00001.1 534 TAPFLARVNEACGYYGALFDSLDATVARDNMERVKIESG-LSRKMANSVACEGRDRVERCEVFGKWRARMSMAGFVSRPMSQLVA 617 ***********************************.***************************************** PP GRAS 335 kqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ ++ l+ + g++v+e+sg +++gW++r+L+++SaWr Peaxi162Scf00444g00001.1 618 NSLRSKLNSGTrgNPGFTVNEQSGGICFGWMGRTLTVASAWR 659 9999876556899************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.439	259	637	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-104	287	659	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MSSGFSGDFY GGMNTGRSSM IPMNNNNNNT LRPQVQVQQL PYGTQISGML PDHGAQQIIQ 60 GRPNLMGKRS LAEFQQQQQF QFLQQQMLQQ QQQQQQQGVG FYLRNVKPRS YQQSSPISPL 120 SSLDFSTSTG SSILSDFSSN SNVSTRQSLP VFQQLHSQPS LPLANSNISG FLTPSTHNYS 180 TGVSVSSLNP IHNKAAVQES EKKMMNQLQE LEKQLLEDEE EDGDTVSVVT NNEWSDTIQN 240 LITPCSQNQN QNQNQNQNQK QASLSPSSST SSCASSTESP PITCPKQSII EAATAISDGK 300 NDVAVEILTR LSQVANVRGS SDQRLTAYMV SALRSRVNPT DYPPPVMELH SREHVDSTQN 360 LYEVSPCFKL GFMAANLAIL EAVAEQPLNN KVHVIDFDIG QGGQYLHLLH ALAAAMKSDS 420 NKPPPVLKIT AFTDQVGGVD NRLNSIGLEL KALASKIGVC LFFNVMSCNI TEMSRDKLGI 480 EADEALAVNF AFKLYRLPDE SVTTENLRDE LLRRVKGLSP KVVTMVEQEL NGNTAPFLAR 540 VNEACGYYGA LFDSLDATVA RDNMERVKIE SGLSRKMANS VACEGRDRVE RCEVFGKWRA 600 RMSMAGFVSR PMSQLVANSL RSKLNSGTRG NPGFTVNEQS GGICFGWMGR TLTVASAWR

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MSSGFSGDFY GGMNTGRSSM IPMNNNNNNT LRPQVQVQQL PYGTQISGML PDHGAQQIIQ  60
GRPNLMGKRS LAEFQQQQQF QFLQQQMLQQ QQQQQQQGVG FYLRNVKPRS YQQSSPISPL  120
SSLDFSTSTG SSILSDFSSN SNVSTRQSLP VFQQLHSQPS LPLANSNISG FLTPSTHNYS  180
TGVSVSSLNP IHNKAAVQES EKKMMNQLQE LEKQLLEDEE EDGDTVSVVT NNEWSDTIQN  240
LITPCSQNQN QNQNQNQNQK QASLSPSSST SSCASSTESP PITCPKQSII EAATAISDGK  300
NDVAVEILTR LSQVANVRGS SDQRLTAYMV SALRSRVNPT DYPPPVMELH SREHVDSTQN  360
LYEVSPCFKL GFMAANLAIL EAVAEQPLNN KVHVIDFDIG QGGQYLHLLH ALAAAMKSDS  420
NKPPPVLKIT AFTDQVGGVD NRLNSIGLEL KALASKIGVC LFFNVMSCNI TEMSRDKLGI  480
EADEALAVNF AFKLYRLPDE SVTTENLRDE LLRRVKGLSP KVVTMVEQEL NGNTAPFLAR  540
VNEACGYYGA LFDSLDATVA RDNMERVKIE SGLSRKMANS VACEGRDRVE RCEVFGKWRA  600
RMSMAGFVSR PMSQLVANSL RSKLNSGTRG NPGFTVNEQS GGICFGWMGR TLTVASAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-36	287	659	6	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019233451.1	0.0	PREDICTED: scarecrow-like protein 8
TrEMBL	A0A075F2G5	0.0	A0A075F2G5_TOBAC; GRAS10 protein
STRING	XP_009787242.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4023	24	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	1e-139	SCARECROW-like 8