PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00430g00311.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 163aa    MW: 18835.7 Da    PI: 10.1784
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00430g00311.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-19756255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a+k + g
  Peaxi162Scf00430g00311.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAAKLICG 56
                              69******9.**********8.....334**********************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.14E-34666No hitNo description
Gene3DG3DSA:3.30.730.102.2E-33764IPR001471AP2/ERF domain
PfamPF008476.7E-12757IPR001471AP2/ERF domain
PROSITE profilePS5103220.943764IPR001471AP2/ERF domain
SMARTSM003801.1E-38770IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-21766IPR016177DNA-binding domain
PRINTSPR003672.5E-11819IPR001471AP2/ERF domain
PRINTSPR003672.5E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MARQTQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA AKLICGHRAR  60
TNFPYNPNMP QTSSSKLLSA TLTAKLHKCY MASLQMTKTS AQEQRIQSQV ELNIPKIAPI  120
QENNAYEMRE QMVMPKPSVL IHHQEAVNLG VRKVEYVESI PQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17468267ATERF1
3gcc_A2e-17468267ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0776262e-89AY077626.1 Lycopersicon esculentum ethylene response factor 1 (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601361.11e-92PREDICTED: ethylene-responsive transcription factor ERF003-like isoform X2
RefseqXP_016512703.11e-92PREDICTED: ethylene-responsive transcription factor ERF003-like isoform X2
SwissprotQ94AW55e-58ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S4DH563e-91A0A1S4DH56_TOBAC; ethylene-responsive transcription factor ERF003-like isoform X2
STRINGXP_009601360.12e-85(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-38ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]