PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00428g00117.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 359aa    MW: 39612.8 Da    PI: 6.4344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00428g00117.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-152471148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  Peaxi162Scf00428g00117.1 24 KGLWSPEEDEKLMNYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 71
                              678*******************************************97 PP
2Myb_DNA-binding52.41.2e-1677120146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+++++E+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
  Peaxi162Scf00428g00117.1  77 RGAFSPQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 120
                               89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-231774IPR009057Homeodomain-like
PROSITE profilePS5129416.7681971IPR017930Myb domain
SuperFamilySSF466892.21E-2822118IPR009057Homeodomain-like
SMARTSM007173.9E-112373IPR001005SANT/Myb domain
PfamPF002498.1E-142471IPR001005SANT/Myb domain
CDDcd001678.25E-102771No hitNo description
PROSITE profilePS5129425.53472126IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2575127IPR009057Homeodomain-like
SMARTSM007179.0E-1676124IPR001005SANT/Myb domain
PfamPF002495.9E-1577120IPR001005SANT/Myb domain
CDDcd001671.87E-1179119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MRKPEHGSVM KEKGNNNNKA KLRKGLWSPE EDEKLMNYML TNGQGCWSDI ARNAGLQRCG  60
KSCRLRWINY LRPDLKRGAF SPQEEELIVH LHSILGNRWS QIAARLPGRT DNEIKNFWNS  120
TIKKRLKNNN NNNNNNNSSN NNTPSPNTSD SSSDLRVLMG GSIFPMQGHD VNVMAGLCMD  180
NSSSTTSASS LQAIVPNNHF NPFPQLDSTN YDIIGAAGLY NLPPCLGQFG SSSGHDGGVV  240
DYGVVEAYSS MGLGSDFSVP PLESGNKGTM GENSNIVNFS SNVSAVNDYS LFDKKTNGNN  300
QQLMSDSSDQ SLKVEDYMVG FGNSHHHHWH GESLRIGEFD WEGLLANVSS LPYLDFQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27221265108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754403e-80HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755133e-80HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612035.10.0PREDICTED: myb-related protein Hv33-like
RefseqXP_016432968.10.0PREDICTED: myb-related protein Hv33-like
TrEMBLA0A1S3WZJ00.0A0A1S3WZJ0_TOBAC; myb-related protein Hv33-like
STRINGXP_009612035.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.18e-72myb domain protein 83