PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00427g00516.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bZIP

Protein Properties

Length: 345aa MW: 37090.4 Da PI: 5.4829

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00427g00516.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	79.8	3.3e-25	246	308	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL++kv++L++eN++Lk+el++l++e++kl+se+ Peaxi162Scf00427g00516.1 246 ERELKRQKRKQSNRESARRSRLRKQAECEELQRKVETLSNENSTLKDELQRLSEECEKLTSEN 308 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	1.5E-26	1	91	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	1.3E-20	241	305	No hit	No description
SMART	SM00338	1.0E-23	246	310	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.5E-22	246	308	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.748	248	311	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.18E-12	249	305	No hit	No description
CDD	cd14702	1.80E-25	251	301	No hit	No description
PROSITE pattern	PS00036	0	253	268	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0010629	Biological Process	negative regulation of gene expression
GO:0090342	Biological Process	regulation of cell aging
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGAGEESTPT KSSKPVSTQE TATTPSYPDW SNSMQAYYSA GATPPFFASP VASPTPPYLW 60 GGQHPGMPPY GTPLPYPAFY PHAGVYAHPN MAMQTPNTVQ ANPESDGKGP EGKDRSSSKK 120 VKASLGGKVG NSGKVTSGSG NDGATQSDES RSEGTSDTND ENDNHEFAAN KKGSFNQMLA 180 DGASAQNNPS GANYQTSVPG NPVTMPATNL NIGMDVWNAS STVPGAMNMQ PNATGPVITD 240 KWVQDERELK RQKRKQSNRE SARRSRLRKQ AECEELQRKV ETLSNENSTL KDELQRLSEE 300 CEKLTSENNS IKEELTRWCG PDAVSKLESN GNATHRQSSV EEAAN

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGAGEESTPT KSSKPVSTQE TATTPSYPDW SNSMQAYYSA GATPPFFASP VASPTPPYLW  60
GGQHPGMPPY GTPLPYPAFY PHAGVYAHPN MAMQTPNTVQ ANPESDGKGP EGKDRSSSKK  120
VKASLGGKVG NSGKVTSGSG NDGATQSDES RSEGTSDTND ENDNHEFAAN KKGSFNQMLA  180
DGASAQNNPS GANYQTSVPG NPVTMPATNL NIGMDVWNAS STVPGAMNMQ PNATGPVITD  240
KWVQDERELK RQKRKQSNRE SARRSRLRKQ AECEELQRKV ETLSNENSTL KDELQRLSEE  300
CEKLTSENNS IKEELTRWCG PDAVSKLESN GNATHRQSSV EEAAN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	268	RRSRLRK
2	262	269	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00039	PBM	Transfer from AT4G36730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ730246	0.0	KJ730246.1 Nicotiana tabacum G-box-binding factor 1-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803268.1	0.0	PREDICTED: G-box-binding factor 1-like isoform X1
Refseq	XP_019230001.1	0.0	PREDICTED: G-box-binding factor 1-like
Swissprot	P42774	1e-108	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A9XLF4	0.0	A9XLF4_PETIN; Uncharacterized protein
STRING	XP_009803268.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3780	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	1e-106	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]