PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00427g00052.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 550aa    MW: 60771.5 Da    PI: 5.3736
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00427g00052.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS328.11.7e-1001835482374
                      GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      ++ +++++s+++++++++++k+fs
  Peaxi162Scf00427g00052.1 183 VDELIRFAECFETNAFQLAHVILARLNQRlRSASGKPLQRAAFYFKEALQAQLAG------STRQTRPSSSSDVIQTIKSYKIFS 261
                               678*************************99*************************......778888999999************ PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLa 166
                               ++sPi+ fs +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++e+    +p +RiT+++++e   + e + ++e+L+
  Peaxi162Scf00427g00052.1 262 NISPIPMFSSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAESrkavTPVFRITALVPEE--YAVESRLIRENLT 344
                               ************************************************8884434449**********66..99999******** PP

                      GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhn 249
                               +fA+el++ fe+++++ +++e l+++++++  gE++aV l+ +++r +          + +++ +++++P+vvv+v++e  + ++
  Peaxi162Scf00427g00052.1 345 QFARELNIGFEIDFVLIRTFELLSFKSIKFMDGEKTAVLLSPAIFRRV------G---SGFVSDLRRVNPNVVVHVDSEglMGYG 420
                               **********************************************98......3...48*******************87788* PP

                      GRAS 250 sesFlerflealeyysalfdsl.eaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                               ++sF + +++ le+ys+l++sl +a+++  +   ++++k+E ++l ++iv++va+ g++ +      ++W+e++ +aGF+pv ls
  Peaxi162Scf00427g00052.1 421 TASFRQTVIDGLEFYSTLLESLeAANIGGGNncgDWMRKIESFVLFPKIVELVAAIGRK-NGGGGGGGSWKEAVVAAGFRPVGLS 504
                               **********************88899988889999**********************8.888899******************* PP

                      GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++a  qa++ll +v+++g++v +++++++l+W+dr+Lv++SaWr
  Peaxi162Scf00427g00052.1 505 QFADFQADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATSAWR 548
                               *******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.445156528IPR005202Transcription factor GRAS
PfamPF035145.8E-98183548IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MKVPFSSNDN VSSKPLNNSN SNNNLRNSSF PATTNSPNLC YEPKSVLELR RSPSPILDNK  60
QVITNPDYST LCGGGEDPLQ LGDHVLSNFE DWDSLMRELG LQEDSASLSK NNPQLTLTQT  120
ESLTQFHTLS EYSADSAQFG SSEFSFTENY PQQFPTVNQG NYINALDLAT GDNNNWNLGF  180
DYVDELIRFA ECFETNAFQL AHVILARLNQ RLRSASGKPL QRAAFYFKEA LQAQLAGSTR  240
QTRPSSSSDV IQTIKSYKIF SNISPIPMFS SFTANQAVLE AVDGSMLVHV IDFDIGLGGH  300
WASFMKELAD KAESRKAVTP VFRITALVPE EYAVESRLIR ENLTQFAREL NIGFEIDFVL  360
IRTFELLSFK SIKFMDGEKT AVLLSPAIFR RVGSGFVSDL RRVNPNVVVH VDSEGLMGYG  420
TASFRQTVID GLEFYSTLLE SLEAANIGGG NNCGDWMRKI ESFVLFPKIV ELVAAIGRKN  480
GGGGGGGSWK EAVVAAGFRP VGLSQFADFQ ADCLLGRVQV RGFHVAKRQA EMLLCWHDRA  540
LVATSAWRCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2519054726377Protein SCARECROW
5b3h_D1e-2519054726377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5177930.0EF517793.1 Petunia integrifolia subsp. inflata BAC 126I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433149.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-144SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA9XLF50.0A9XLF5_PETIN; Uncharacterized protein
STRINGXP_009803270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-144GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]