PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00426g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 512aa MW: 56128.9 Da PI: 9.0114 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.2 | 4.2e-42 | 152 | 227 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC dls+ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk++ Peaxi162Scf00426g00007.1 152 CQVQGCGRDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPH 227 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.1E-33 | 148 | 213 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.573 | 149 | 226 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.16E-38 | 151 | 230 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-32 | 152 | 225 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 512 aa Download sequence Send to blast |
MESWSYFSGG KGFISEESVN LNDGRVKNGV MGWELKTQSS YGSTVMCSSQ ESDNNQVYPE 60 LGSQNLLRKG MLNDQIRDNL TSKLGGSSIF SSSPAVESNC RDSSLFDLKL GRFPDHIDAK 120 VFKSPKILPS FTSAESIVPA KRMRAGGVSS FCQVQGCGRD LSSSKDYHKR HKVCEVHSKT 180 AKVIVNGIEQ RFCQQCSRFH LLAEFDDGKR SCRKRLAGHN ERRRKPHTGT RFRGTSFATS 240 SFICQDILGS RILHQPKYEM NDWYKNVKVE DGVDYSPQLT MPFTNGQLQP KSVFTSYQAK 300 KQCPPLHNEG LPSLTGRKIN ESTNTSPHEM GGSDFVSPSL FRTTSIGTEV LHVLDTSSNI 360 QGLSGISSSS NALSLLSSQS QDSSNHSTII PVAHPLIPPS SNSHYNVTQV SKKVIQVSPQ 420 ASASSLSNTF NPSGVNSAEG GLEQILIPSN TSGINGVIQG QNCVNTKNQL SCEDGPTINL 480 FQLSSQLQRV EHQRLSMQMK QDNSAFPGLR IT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 151 | 225 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019230968.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 | ||||
TrEMBL | A0A2K9ZXI2 | 0.0 | A0A2K9ZXI2_PETHY; Squamosa promoter binding-like protein 6d | ||||
STRING | XP_009758722.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5187 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69170.1 | 9e-44 | SBP family protein |