PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00420g00650.1
Common NameATA, RAM1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 696aa    MW: 77073.8 Da    PI: 5.2879
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00420g00650.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.35.7e-1343316951374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl 83 
                               lv+lLl+cAeavs++d  la+++L +l+  ++p gd+mqR+a++fteAL+arla    ++   +a +p +  + ns e l+++++
  Peaxi162Scf00420g00650.1 331 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAAtlATKPSTSARKPFNPFPPNSLEILKIYQI 415
                               68****************************************************943233333334444444566********** PP

                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                               +++++P++kf+h+taNqaI ea+e eervHiiD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++
  Peaxi162Scf00420g00650.1 416 LYQACPYVKFAHFTANQAIFEAFEAEERVHIIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVRETGRCLTEL 496
                               ******************************************************************....9************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A++l+vpfef++ v ++ledl++++++ + gEalaVn+v +lhr++       +++ ++L ++++  P++v++veqea+hn++ F
  Peaxi162Scf00420g00650.1 497 AHSLHVPFEFHP-VGEQLEDLKPHMFNRRVGEALAVNSVNRLHRVP------VNCIGNLLAMIRDQAPNIVTIVEQEASHNGPYF 574
                               ************.7*******************************9......444557*************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               l rfleal+yysa+fdsl+a++p++s++r+k+E+ ++++ei+n+v+ceg+er+ rhe+lekWr+ +e  GFk v+ls +a++q k
  Peaxi162Scf00420g00650.1 575 LGRFLEALHYYSAIFDSLDATFPADSSQRAKLEQYIFAPEIMNIVSCEGQERNVRHERLEKWRRLMEGKGFKGVALSANAVTQSK 659
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ll  ++ dgy++ e++g+l+lgW+dr+++++SaWr
  Peaxi162Scf00420g00650.1 660 ILLGLYSCDGYKLTEDDGCLLLGWQDRAILAASAWR 695
                               ***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.957305675IPR005202Transcription factor GRAS
PfamPF035142.0E-131331695IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MGSLNNEVGS IKCEDGSLKS ENSFTKLPSE ESLASESKKV TPVSSDFELN CGSLAPTSLS  60
FPAMKFEDDI EIQSPDNSIW ESFFADHLEG DFMISSPIRN LPSPQPASSF SSSHNNSNNN  120
NNNNYNIYAH RQGIHGQDMM MCSPPRSPLG LYNHPSHKGK GLSPLQKVFN SPNNQFMQIE  180
SFNLPALESF LDDDYDKEED LASSYSTLKV SGTGVAGSSS ESFDALSVVP DDLLECLALP  240
SSLSNTSGGF MESLLSDTSA VQVINPDDEI FRTGSIAPLS QQLHQERQQE KQQKQRPVTH  300
ARPQQQQIIN HNVLVPLAAA PDQEQDSGLQ LVHLLLACAE AVSKEDYMLA RRYLHHLNRV  360
VTPLGDSMQR VASCFTEALS ARLAATLATK PSTSARKPFN PFPPNSLEIL KIYQILYQAC  420
PYVKFAHFTA NQAIFEAFEA EERVHIIDLD ILQGYQWPAF MQALAARPGG APFLRITGVG  480
PSPEAVRETG RCLTELAHSL HVPFEFHPVG EQLEDLKPHM FNRRVGEALA VNSVNRLHRV  540
PVNCIGNLLA MIRDQAPNIV TIVEQEASHN GPYFLGRFLE ALHYYSAIFD SLDATFPADS  600
SQRAKLEQYI FAPEIMNIVS CEGQERNVRH ERLEKWRRLM EGKGFKGVAL SANAVTQSKI  660
LLGLYSCDGY KLTEDDGCLL LGWQDRAILA ASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-9833869425377Protein SCARECROW
5b3h_D6e-9833869425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6122640.0KR612264.1 Petunia axillaris transcription factor (ATA/RAM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803754.10.0PREDICTED: DELLA protein RGL2-like
RefseqXP_016497576.10.0PREDICTED: DELLA protein RGL2-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A0M4FMK20.0A0A0M4FMK2_PETAX; Transcription factor
STRINGXP_009803754.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-98RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Rich MK, et al.
    The Petunia GRAS Transcription Factor ATA/RAM1 Regulates Symbiotic Gene Expression and Fungal Morphogenesis in Arbuscular Mycorrhiza.
    Plant Physiol., 2015. 168(3): p. 788-97
    [PMID:25971550]
  3. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]