PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00413g00061.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

GRAS

Protein Properties

Length: 658aa MW: 74341.3 Da PI: 5.9105

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00413g00061.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	353.9	2.5e-108	287	653	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 lL++cAea +s + + ++++++++++sp gd ++Rla +f++AL+ar ++ + + ++++ s s+ l+a++++ ++ Peaxi162Scf00413g00061.1 287 LLTRCAEAAASYNSKTFVEVVKKIRQHSSPFGDGNERLAYCFANALEARFSG--GDTNAFSNCKKIS---ASDFLKAYQVYITAC 366 89***********************************************9..3344344566655...99********* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171 P+ ++s++ aN+ I + +++++vHiiDf+i +G+QWp+L++ ++ Rp+gpp+lRiTg++ p++g +e++eetg+rL+++ ++ Peaxi162Scf00413g00061.1 367 PFKRMSNIFANKSIAKLSSEATKVHIIDFGILYGFQWPCLIHGISLRPGGPPKLRITGIDFPQPGfrPAERVEETGRRLENYSKR 451 ************************************************************9**************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 ++vpfe+++ +akr+++++le+L+++++E ++Vn+ ++l++++de+vs +++rd+vL+l+++++P+ +v+ +a +n++ F +r Peaxi162Scf00413g00061.1 452 FNVPFEYKA-IAKRWDAITLEDLNIEKDEFVVVNCLYRLKNIPDETVSDKNPRDAVLNLINEINPHFFVHGVVNAMYNAPFFTTR 535 *****.7********************************************************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 f eal ++s+ fd++ea+++re+e r++ E+e++gr+i+nv+aceg+er+er e++++W+ r + aGFk +pl+++++k++k+ + Peaxi162Scf00413g00061.1 536 FREALFHFSSQFDMFEATMAREDEGRRMFEQEIFGRDIMNVIACEGTERVERPESYKQWQVRNQIAGFKRLPLNQDIVKEVKAKV 620 ********************************************************************************* PP GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + + + v+e+s+++++gWk+r ++++S+W+ Peaxi162Scf00413g00061.1 621 KMAYHRDFLVDEDSNWMLQGWKGRIMYALSVWE 653 999***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.753	258	633	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.7E-106	287	653	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MMNNTLFSLG DHNSCGGFEF GHHFLSASTT LSTNLGSGFS DDQVGDGESR VVESDYFDGV 60 FKYIQQMLME EDDMESRPCM FQDCMALQAA EKSFYDALTQ KNDFIDDDCN AVTQFVDSNF 120 IDSDLGGPES SLEQQNSLFC YPCDGPLNDV LLNPPLNNKN NNHQAADNGG DAVVPATNQG 180 GNSSSKKSSQ GKKNHNRQDG AQYSSEGRNP KQFASTYVAE PDHTEGYDKA LLCPAMSPSF 240 YEESSDSENV AWNKQKSCHL KESKRGRPRG SKKGAKTTNE VVDLTCLLTR CAEAAASYNS 300 KTFVEVVKKI RQHSSPFGDG NERLAYCFAN ALEARFSGGD TNAFSNCKKI SASDFLKAYQ 360 VYITACPFKR MSNIFANKSI AKLSSEATKV HIIDFGILYG FQWPCLIHGI SLRPGGPPKL 420 RITGIDFPQP GFRPAERVEE TGRRLENYSK RFNVPFEYKA IAKRWDAITL EDLNIEKDEF 480 VVVNCLYRLK NIPDETVSDK NPRDAVLNLI NEINPHFFVH GVVNAMYNAP FFTTRFREAL 540 FHFSSQFDMF EATMAREDEG RRMFEQEIFG RDIMNVIACE GTERVERPES YKQWQVRNQI 600 AGFKRLPLNQ DIVKEVKAKV KMAYHRDFLV DEDSNWMLQG WKGRIMYALS VWEPIHRS

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MMNNTLFSLG DHNSCGGFEF GHHFLSASTT LSTNLGSGFS DDQVGDGESR VVESDYFDGV  60
FKYIQQMLME EDDMESRPCM FQDCMALQAA EKSFYDALTQ KNDFIDDDCN AVTQFVDSNF  120
IDSDLGGPES SLEQQNSLFC YPCDGPLNDV LLNPPLNNKN NNHQAADNGG DAVVPATNQG  180
GNSSSKKSSQ GKKNHNRQDG AQYSSEGRNP KQFASTYVAE PDHTEGYDKA LLCPAMSPSF  240
YEESSDSENV AWNKQKSCHL KESKRGRPRG SKKGAKTTNE VVDLTCLLTR CAEAAASYNS  300
KTFVEVVKKI RQHSSPFGDG NERLAYCFAN ALEARFSGGD TNAFSNCKKI SASDFLKAYQ  360
VYITACPFKR MSNIFANKSI AKLSSEATKV HIIDFGILYG FQWPCLIHGI SLRPGGPPKL  420
RITGIDFPQP GFRPAERVEE TGRRLENYSK RFNVPFEYKA IAKRWDAITL EDLNIEKDEF  480
VVVNCLYRLK NIPDETVSDK NPRDAVLNLI NEINPHFFVH GVVNAMYNAP FFTTRFREAL  540
FHFSSQFDMF EATMAREDEG RRMFEQEIFG RDIMNVIACE GTERVERPES YKQWQVRNQI  600
AGFKRLPLNQ DIVKEVKAKV KMAYHRDFLV DEDSNWMLQG WKGRIMYALS VWEPIHRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-46	290	654	25	380	Protein SCARECROW
5b3h_A	3e-46	290	654	24	379	Protein SCARECROW
5b3h_D	3e-46	290	654	24	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006350886.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	M1CZT4	0.0	M1CZT4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400078286	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-163	SCARECROW-like 14