PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00393g00042.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 391aa    MW: 43546.6 Da    PI: 5.0798
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00393g00042.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS200.21.2e-61632473191
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                                lLl+cAe v+ ++le+a++lL +  el+sp g++ +R+aayf+eAL+ar+ +s  + y+ l+ ++ + ++s++ ++al+ ++ +
  Peaxi162Scf00393g00042.1  63 GLLLQCAEYVHMENLEEASNLLPETAELSSPFGSSAERVAAYFAEALSARIISSHLRFYSPLNLKTLTLTHSQKLFTALQSYNTI 147
                               58*********************************************************************************** PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                               sP++kfsh taNqaI++ +ege++vHiiD+di+qGlQWp L+q L+sR+++  s++iTgvgs    s+e le+tg+rL++fA+++
  Peaxi162Scf00393g00042.1 148 SPLIKFSHYTANQAIYQVLEGEDHVHIIDLDIMQGLQWPGLFQILSSRSKKLRSIKITGVGS----SRELLESTGRRLTEFANSF 228
                               **************************************************************....9****************** PP

                      GRAS 173 gvpfefnvlvakrledlel 191
                               g+pfef++l  ++ e+l+l
  Peaxi162Scf00393g00042.1 229 GLPFEFQPLEGSDSETLRL 247
                               ********97777777765 PP
2GRAS142.34.8e-44241388224374
                      GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                                +e+L+l+  l+Pk++++veq+++h +++Fl+rf+eal+yysalfd+l  +l+ +s er++vE++l+g ei+n+va +g +r+ +
  Peaxi162Scf00393g00042.1 241 DSETLRLLTLLRPKLITIVEQDLSH-GGNFLRRFVEALHYYSALFDALGDGLSVDSVERHMVEQQLFGCEIRNIVAVSGPKRTGE 324
                               4689*********************.789****************************************************8877 PP

                      GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  +e+W + l+++GF pv+ls + a+qa+lll +++ +gy++ ee+g+l lgWkd +L+++SaW+
  Peaxi162Scf00393g00042.1 325 VP-VERWGDELKRVGFLPVSLSGTPAAQASLLLGMFP-RGYTLVEENGCLKLGWKDLSLLTASAWQ 388
                               65.9*********************************.***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.16435369IPR005202Transcription factor GRAS
PfamPF035144.2E-5963247IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSSKRSIVEF TPVVSDEDPV LTKRPRHFPS SGDVDISGER EVEEEGEEVV LVDHDRIGLR  60
LLGLLLQCAE YVHMENLEEA SNLLPETAEL SSPFGSSAER VAAYFAEALS ARIISSHLRF  120
YSPLNLKTLT LTHSQKLFTA LQSYNTISPL IKFSHYTANQ AIYQVLEGED HVHIIDLDIM  180
QGLQWPGLFQ ILSSRSKKLR SIKITGVGSS RELLESTGRR LTEFANSFGL PFEFQPLEGS  240
DSETLRLLTL LRPKLITIVE QDLSHGGNFL RRFVEALHYY SALFDALGDG LSVDSVERHM  300
VEQQLFGCEI RNIVAVSGPK RTGEVPVERW GDELKRVGFL PVSLSGTPAA QASLLLGMFP  360
RGYTLVEENG CLKLGWKDLS LLTASAWQPC D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-136473895380Protein SCARECROW
5b3h_A1e-136473894379Protein SCARECROW
5b3h_D1e-136473894379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235805.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ11e-147SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1J6L0K60.0A0A1J6L0K6_NICAT; Scarecrow-like protein 23
STRINGXP_009804953.10.0(Nicotiana sylvestris)
STRINGPGSC0003DMT4000306520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-130GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]