PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00392g00316.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 377aa    MW: 42360.9 Da    PI: 9.7142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00392g00316.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.9e-175811799
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                               +p kf+++  + ++  + +tle +sg +W+v l     +++ +l+ GWkeFv+a+ Lke D ++Fk++g+s+f   v +f++
  Peaxi162Scf00392g00316.1  5 AIPQKFTNN--LREKLAVSVTLEGPSGATWSVGL--IADGDALFLKHGWKEFVDAHVLKEDDLLIFKYNGDSRF--DVLMFDR 81
                              599***944..45568999***************..888889****************************9999..8888876 PP
2B3361.2e-112733541096
                               HHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                        B3  10 vlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                 k   +++p   a+ h    +       +++l+  + ++W+ +l    ++  + lt+GW++Fv +n L+e D++vF l+  +++
  Peaxi162Scf00392g00316.1 273 IYKGFYMSIPSGWARIHlpfrN------GDVMLRV-KENTWQARL--YERRFNCGLTGGWRNFVLDNFLEEFDVCVFNLTAGEDG 348
                               4556778999999977754321......2566555.88*******..77777788************************988888 PP

                               ..EEEE CS
                        B3  91 elvvkv 96 
                               ++ + v
  Peaxi162Scf00392g00316.1 349 TPILDV 354
                               887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.1E-8182IPR003340B3 DNA binding domain
PROSITE profilePS5086315.58182IPR003340B3 DNA binding domain
PfamPF023624.7E-14581IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18581IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-17581IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-16680No hitNo description
Gene3DG3DSA:2.40.330.103.1E-16261358IPR015300DNA-binding pseudobarrel domain
CDDcd100176.19E-17263358No hitNo description
PROSITE profilePS5086310.941264360IPR003340B3 DNA binding domain
SMARTSM010195.8E-4264360IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-14265358IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-10268353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MKLQAIPQKF TNNLREKLAV SVTLEGPSGA TWSVGLIADG DALFLKHGWK EFVDAHVLKE  60
DDLLIFKYNG DSRFDVLMFD RQNLCEKEAS YFVKACAHTD AESGGKTKMS IPESYDKAYE  120
PSHEVFEGTP RIKPRENVDT ANESSHEVIE GTARKKPRKN GACTSTSATR AKRKLQTRKN  180
IDTANESSHE VFEGTARKKP GENGASTPTS GTRAKGKLQT REIKSSKTRS GTQLQLKSNR  240
RAVNEEEKRK TLDMSTVAVT ENSLRVVMRS THIYKGFYMS IPSGWARIHL PFRNGDVMLR  300
VKENTWQARL YERRFNCGLT GGWRNFVLDN FLEEFDVCVF NLTAGEDGTP ILDVSIFRVV  360
EEVIPPSQIR TALSSRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1423836322146B3 domain-containing transcription factor VRN1
4i1k_B1e-1423836322146B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-33B3 family protein