PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00390g10026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 26399.4 Da PI: 4.9564 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.2e-20 | 95 | 145 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp+ r kr++lg+++t+eeAa +++a+ k++g Peaxi162Scf00390g10026.1 95 KKFRGVRQRP-WGRWAAEIRDPT----RrKRVWLGTYDTPEEAAVVYDKAAVKFKG 145 59********.**********84....34**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 5.7E-68 | 11 | 230 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 3.39E-33 | 95 | 153 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-30 | 96 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-12 | 96 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.342 | 96 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-38 | 96 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-22 | 96 | 154 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.1E-10 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-10 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MTGNSVMSPM NIPPTIKFSQ HITNTNKHVH DQISHKVVRI ILTDPDATDS SSDDEEENQN 60 NVRRIKRHVT EINIMSRDKK RRFISKENAD VTRGKKFRGV RQRPWGRWAA EIRDPTRRKR 120 VWLGTYDTPE EAAVVYDKAA VKFKGQNAVI NFPLVSTEEL TVTEKSEDDV ALSPTSVLFN 180 GDDFAPFDNL GLCEADGLEF DVDSLFQWPE KNYSEEFGEF DFDDFALEAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 93 | 154 | 2 | 64 | ATERF1 |
3gcc_A | 2e-22 | 93 | 154 | 2 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607079.1 | 1e-101 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Refseq | XP_016468771.1 | 1e-101 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 3e-87 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A1S3ZWU7 | 1e-100 | A0A1S3ZWU7_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like | ||||
STRING | XP_009607079.1 | 1e-101 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5227 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 3e-34 | cytokinin response factor 2 |