PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00390g10026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 230aa    MW: 26399.4 Da    PI: 4.9564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00390g10026.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-2095145155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++++GVr+++ +grW+AeIrdp+    r kr++lg+++t+eeAa  +++a+ k++g
  Peaxi162Scf00390g10026.1  95 KKFRGVRQRP-WGRWAAEIRDPT----RrKRVWLGTYDTPEEAAVVYDKAAVKFKG 145
                               59********.**********84....34**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.7E-6811230IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.39E-3395153No hitNo description
Gene3DG3DSA:3.30.730.102.6E-3096154IPR001471AP2/ERF domain
PfamPF008472.3E-1296143IPR001471AP2/ERF domain
PROSITE profilePS5103224.34296153IPR001471AP2/ERF domain
SMARTSM003801.2E-3896159IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2296154IPR016177DNA-binding domain
PRINTSPR003678.1E-1097108IPR001471AP2/ERF domain
PRINTSPR003678.1E-10119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTGNSVMSPM NIPPTIKFSQ HITNTNKHVH DQISHKVVRI ILTDPDATDS SSDDEEENQN  60
NVRRIKRHVT EINIMSRDKK RRFISKENAD VTRGKKFRGV RQRPWGRWAA EIRDPTRRKR  120
VWLGTYDTPE EAAVVYDKAA VKFKGQNAVI NFPLVSTEEL TVTEKSEDDV ALSPTSVLFN  180
GDDFAPFDNL GLCEADGLEF DVDSLFQWPE KNYSEEFGEF DFDDFALEAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2293154264ATERF1
3gcc_A2e-2293154264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607079.11e-101PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
RefseqXP_016468771.11e-101PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046823e-87PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1S3ZWU71e-100A0A1S3ZWU7_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_009607079.11e-101(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-34cytokinin response factor 2