PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00390g00137.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | LBD | ||||||||
Protein Properties | Length: 187aa MW: 21241.3 Da PI: 6.5916 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.2 | 4.2e-36 | 12 | 109 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklq 84 +C+aCk+lrr+C++dC++ p+fp ++p+kf +vh++FGasn++k+l++ p ++reda+ s+vyeA r+rdP+yG+vg+i++lq Peaxi162Scf00390g00137.1 12 PCSACKLLRRRCTQDCIFLPHFPPTEPQKFIVVHRVFGASNISKFLQQEiPMDNREDAVISMVYEATSRLRDPIYGSVGIISALQ 96 7*********************************************87637778******************************* PP DUF260 85 qqleqlkaelall 97 +++ +l++el+++ Peaxi162Scf00390g00137.1 97 KHVVHLQTELNEA 109 *********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.781 | 11 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-37 | 12 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MDSTNKKNKH MPCSACKLLR RRCTQDCIFL PHFPPTEPQK FIVVHRVFGA SNISKFLQQE 60 IPMDNREDAV ISMVYEATSR LRDPIYGSVG IISALQKHVV HLQTELNEAL AEAMSLRTQL 120 SNALCLPSLL EGSPFTPEDH RLHHFQKPNE QYAYDNASDA LPLLPQAADH NYCLQETEVL 180 PVPFFNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-37 | 12 | 114 | 11 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-37 | 12 | 114 | 11 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-65 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 1e-65 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016503569.1 | 1e-111 | PREDICTED: LOB domain-containing protein 25-like isoform X1 | ||||
Swissprot | Q9LQR0 | 9e-41 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A1S4CRC5 | 1e-109 | A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1 | ||||
STRING | Solyc06g082770.2.1 | 7e-89 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13147 | 14 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-43 | LOB domain-containing protein 1 |