PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00386g00922.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 23905.6 Da PI: 5.8091 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.4e-10 | 53 | 101 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er RR ++ + + L++l+P+ + +s K + i+ + ++YIk+L+ Peaxi162Scf00386g00922.1 53 PQIKERERRGKMAEMYTVLQSLVPTlS---NSHKATREKIVAESTDYIKQLE 101 5688*********************55...********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.03 | 48 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.21E-8 | 48 | 105 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-13 | 50 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-12 | 51 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-8 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-7 | 54 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 10.348 | 145 | 210 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MWQEIMLKEE TEEEEIEKLF MGVMEGYKDS CMPPLTDFCN INNEMACSSK ASPQIKERER 60 RGKMAEMYTV LQSLVPTLSN SHKATREKIV AESTDYIKQL EEEVSRLENL KKSCLGKVLV 120 DKPALSQCRN RVSSVNITVS KGLAFFGIQF QLNQGLMTKI FWVLDKHQAE VLAANISVSE 180 HRLATLTVTV IIGNNDSNTI ENIRRELLLF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630063.1 | 8e-98 | PREDICTED: uncharacterized protein LOC104120081 | ||||
Refseq | XP_016496901.1 | 8e-98 | PREDICTED: uncharacterized protein LOC107815786 | ||||
TrEMBL | A0A1S4C726 | 2e-96 | A0A1S4C726_TOBAC; uncharacterized protein LOC107815786 | ||||
STRING | XP_009630063.1 | 3e-97 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13248 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 3e-06 | bHLH family protein |