PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00385g00620.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 707aa MW: 80413.4 Da PI: 8.4985

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00385g00620.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.2	1.9e-30	12	101	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 fYn+YA+++GFs+r+ + ++s+r++ i +r +vCs+eg++++e+++ +++rr+r+++rtgCka++++k+ + +gkw +tkl++eH Peaxi162Scf00385g00620.1 12 FYNSYARRAGFSTRVGAYRRSRRDDAISTRILVCSMEGFTAPEDSS-KERRRQRTTSRTGCKAHMNIKRLHpSGKWAITKLVKEH 95 9*****************************************99.999****************99********* PP FAR1 86 nHelap 91 nHel+p Peaxi162Scf00385g00620.1 96 NHELVP 101 **86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-26	12	101	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-24	223	309	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.905	507	539	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-9	511	538	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.3E-8	514	541	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MEFESEQAAR VFYNSYARRA GFSTRVGAYR RSRRDDAIST RILVCSMEGF TAPEDSSKER 60 RRQRTTSRTG CKAHMNIKRL HPSGKWAITK LVKEHNHELV PPDKVHILRS HRHISGPARS 120 LIDTLQAAGW GATRIMSVLV KQSGGINNVG FTKTDCQNYM SQCRQKRALG SGAQCIFDYL 180 KQKQAEDPAF FYAVQGGSDN SSGNIFWADS TCPMNYAYFG DTVTFDTTCR TQRYRVPFAP 240 FIGVNHHCQP VLFGCSLLLN ESKSSFVWLF QTWLAAMSGR HPVSITTDHD TIIRSAISEV 300 FPGTRHRFSK SSIFREAQER LSHLLQSFPT FEAEFHKCVN LTETIEEFEL CWESLLGKYT 360 LKDDQWLQSI YDAREHWVPV YLRDTFFGET SISKTSDGTN SFFDGYIDAL TNIHVLITQY 420 EKATASRHEK EVKAEYDTIN ITPSLKTPSP MEKQAANVYT REMFLMFQQE LMATLAYPAT 480 VINDTGSHLV YHVAKFGEDH KVHYVKYSVF EKKASCSCQL FEFSGIPCRH ILATFRVKNV 540 LKLPSHYVLK RWTRKAKSEV VLDEDDLGLP SSDNESFTAR FEKLSLEAMK YVKEGADSKD 600 VYQVSMDALR EASKKVAAAM CSTPSLPQSP LMNKAKEFNL NGNQADCGHS CLVSRDEKIQ 660 ELTTAMVSAT EICEAYQAKL LSILREMEEQ KLRISLKVQS MRLNRIS

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MEFESEQAAR VFYNSYARRA GFSTRVGAYR RSRRDDAIST RILVCSMEGF TAPEDSSKER  60
RRQRTTSRTG CKAHMNIKRL HPSGKWAITK LVKEHNHELV PPDKVHILRS HRHISGPARS  120
LIDTLQAAGW GATRIMSVLV KQSGGINNVG FTKTDCQNYM SQCRQKRALG SGAQCIFDYL  180
KQKQAEDPAF FYAVQGGSDN SSGNIFWADS TCPMNYAYFG DTVTFDTTCR TQRYRVPFAP  240
FIGVNHHCQP VLFGCSLLLN ESKSSFVWLF QTWLAAMSGR HPVSITTDHD TIIRSAISEV  300
FPGTRHRFSK SSIFREAQER LSHLLQSFPT FEAEFHKCVN LTETIEEFEL CWESLLGKYT  360
LKDDQWLQSI YDAREHWVPV YLRDTFFGET SISKTSDGTN SFFDGYIDAL TNIHVLITQY  420
EKATASRHEK EVKAEYDTIN ITPSLKTPSP MEKQAANVYT REMFLMFQQE LMATLAYPAT  480
VINDTGSHLV YHVAKFGEDH KVHYVKYSVF EKKASCSCQL FEFSGIPCRH ILATFRVKNV  540
LKLPSHYVLK RWTRKAKSEV VLDEDDLGLP SSDNESFTAR FEKLSLEAMK YVKEGADSKD  600
VYQVSMDALR EASKKVAAAM CSTPSLPQSP LMNKAKEFNL NGNQADCGHS CLVSRDEKIQ  660
ELTTAMVSAT EICEAYQAKL LSILREMEEQ KLRISLKVQS MRLNRIS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019231145.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S3ZJB9	0.0	A0A1S3ZJB9_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009798613.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]