PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00380g00520.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 296aa    MW: 33791.2 Da    PI: 6.5546
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00380g00520.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05120139120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               ++C+ C+k+F+r  n++ H+
  Peaxi162Scf00380g00520.1 120 FSCTVCNKTFNRFNNMQMHM 139
                               89*****************9 PP
2zf-C2H215.54.8e-05205227123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C +Cgk F  + + ++H +++
  Peaxi162Scf00380g00520.1 205 FTCRKCGKNFAVRGDWRTHEKNC 227
                               89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.03E-5113142No hitNo description
SMARTSM003550.15120142IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201120147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-5120139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SMARTSM00355170168200IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.22E-6186225No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5191225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035555205225IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663205225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MQTHSITYFS PSERAFLEAE VEDELSTVLS LGPPGQNNFP RNTKFHDYFS SNFQLQSYNQ  60
YSSYEESVTV ALHIDTPNSS CTSLNNNPSK NKGDNNNISL AHGEYWIPTP AQILVGPTQF  120
SCTVCNKTFN RFNNMQMHMW GHGSQYRKGP DSLKGTKPAS SMLRLPCYCC AEGCKNNIDH  180
PRSKPLKDFR TLQTHYKRKH GAKPFTCRKC GKNFAVRGDW RTHEKNCGKL WFCICGSDFK  240
HKRSLKDHVK AFGDGHAPHS ENSYYHDVEG EEEEEDEEED FEGNIDDDEE QYGNGT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-164HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236543.11e-163PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-117ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A1S3X8B91e-150A0A1S3X8B9_TOBAC; zinc finger protein WIP6-like
TrEMBLA0A1U7Y1321e-150A0A1U7Y132_NICSY; protein TRANSPARENT TESTA 1
STRINGXP_009796838.11e-151(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-115C2H2-like zinc finger protein