PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00378g00416.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 375aa MW: 42120 Da PI: 5.0261

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00378g00416.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.6	2.2e-08	203	250	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Peaxi162Scf00378g00416.1 203 AHSLAERVRREKIGERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 250 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-17	197	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.81E-10	197	254	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.9E-17	199	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.25	199	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-5	203	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-9	205	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MDKTNLFLNK SNTMNHELNY FYNSNWENSM DHQNDPFESA LSSIVSSPVT SNVMPSTSNG 60 GDNFVLKELI GKLGSICNSS EMSPHSYINS TTNSCYTTPL NSPPRLNLSI LDHQMNGNYV 120 AQEFKESEFL DSRENSTVSE QIPLGEIGIK YQNDSDEKNG SDNDVAEAAG DGNKKQNKDN 180 EKPAEPPKDY IHVRARRGQA TDAHSLAERV RREKIGERMK FLQDLVPGCN KVTGKAVMLD 240 EIINYVQSLQ RQVEFLSMKL ATLDSRMDFN MESLVSKDLQ MFQSVESLHH NMHPSEISAQ 300 GFPYGLIQSQ QGPNGHMARN VRMQLPYMGG FVEQTPKVPT FFEDDLHSIT QMGFGQIQPE 360 IFPGNMSTAQ MKVEL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MDKTNLFLNK SNTMNHELNY FYNSNWENSM DHQNDPFESA LSSIVSSPVT SNVMPSTSNG  60
GDNFVLKELI GKLGSICNSS EMSPHSYINS TTNSCYTTPL NSPPRLNLSI LDHQMNGNYV  120
AQEFKESEFL DSRENSTVSE QIPLGEIGIK YQNDSDEKNG SDNDVAEAAG DGNKKQNKDN  180
EKPAEPPKDY IHVRARRGQA TDAHSLAERV RREKIGERMK FLQDLVPGCN KVTGKAVMLD  240
EIINYVQSLQ RQVEFLSMKL ATLDSRMDFN MESLVSKDLQ MFQSVESLHH NMHPSEISAQ  300
GFPYGLIQSQ QGPNGHMARN VRMQLPYMGG FVEQTPKVPT FFEDDLHSIT QMGFGQIQPE  360
IFPGNMSTAQ MKVEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009760399.1	1e-180	PREDICTED: transcription factor bHLH78-like
Swissprot	Q9SRT2	1e-74	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A1U7VDK9	1e-179	A0A1U7VDK9_NICSY; transcription factor bHLH78-like
STRING	XP_009760399.1	1e-179	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	6e-77	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]