PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00377g00925.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 309aa    MW: 34937.6 Da    PI: 5.2936
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00377g00925.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.8e-13752146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                              +g+W +eEd  l++ vk++G+++W++I ++  + Rt+k+c++rw +
  Peaxi162Scf00377g00925.1  7 KGPWKEEEDAVLIKHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 52
                              79*************************8887799**********87 PP
2Myb_DNA-binding44.43.9e-1463102344
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                               ++++eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
  Peaxi162Scf00377g00925.1  63 KFSAEEERTVIELQAQFGNK-WARIATYLP-GRTDNDVKNFW 102
                               79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.968258IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-20555IPR009057Homeodomain-like
SuperFamilySSF466898.24E-286102IPR009057Homeodomain-like
SMARTSM007172.0E-11656IPR001005SANT/Myb domain
CDDcd001675.47E-12954No hitNo description
PfamPF139215.6E-121060No hitNo description
Gene3DG3DSA:1.10.10.601.9E-1856108IPR009057Homeodomain-like
PROSITE profilePS5129417.91759110IPR017930Myb domain
SMARTSM007178.7E-1360108IPR001005SANT/Myb domain
PfamPF002491.2E-1263102IPR001005SANT/Myb domain
CDDcd001674.60E-1163102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSEIIKKGPW KEEEDAVLIK HVKKYGPRDW SSIRSKGLLQ RTGKSCRLRW VNKLRPNLKN  60
GVKFSAEEER TVIELQAQFG NKWARIATYL PGRTDNDVKN FWSSRQKRLA KILRNSASQP  120
SKPQKDNNKE APALQKVPSV EEPKLSSPAE ERSLPMSQCC SSSYMNNSDT INMVPLPELE  180
NSTSLPFEPN LLQFEFTPND KNYQYIGTQT SLSFPQIPLQ TDFGHPLGSQ ELPMKLEETD  240
FLDFFGQLST ASDIGNVQVP LVPLCSGPDK SSEIVVKREM DSPLTQDSFI DDFPMDVFDL  300
IDPLPSPSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-28510825126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630342.11e-172PREDICTED: transcription factor GAMYB-like
RefseqXP_016497849.11e-172PREDICTED: transcription factor GAMYB-like
TrEMBLA0A1S4CA661e-171A0A1S4CA66_TOBAC; transcription factor GAMYB-like
STRINGXP_009630342.11e-171(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-80MYB family protein