PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00374g00723.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 798aa    MW: 87408.1 Da    PI: 6.6168
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00374g00723.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.44.2e-1264207792374
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp+++ +   +++ ++a+++f+ 
  Peaxi162Scf00374g00723.1 420 LTLLLQCAEAVSADNLEEANRMLLEVSELSTPFGTSAQRVAAYFSEAMSARLLNSCLGIYAALPVTSIPLPYTQKMASAFQVFNG 504
                               579***************************************************************999999************* PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                               +sP++kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g+    s ++le+tg+rL++fAe+
  Peaxi162Scf00374g00723.1 505 ISPFIKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGN----SMDALEATGKRLSDFAER 585
                               ***************************************************************....****************** PP

                      GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                               lg+pfef + va+++ +l++e+L+v+++Ea+aV++    h+l+d ++s ++    +L l+++l Pkvv+vveq+++h ++sFl r
  Peaxi162Scf00374g00723.1 586 LGLPFEFLP-VADKVGNLDPEKLNVSKREAVAVHWLQ--HSLYDVTGSDAN----TLGLLQRLAPKVVTVVEQDLSH-AGSFLGR 662
                               *********.7*************************9..999999999999....**********************.899**** PP

                      GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                               f+ea++yysalfdsl a +++eseer++vE++ll++ei+nv+a  g +r  + + +++Wre+l+++GF++++l  +aa+qa lll
  Peaxi162Scf00374g00723.1 663 FVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGEVK-FNNWREKLQQSGFRSLSLAGNAAAQATLLL 746
                               ************************************************888776.****************************** PP

                      GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +++s+gy++ e++g+l lgWkd  L+++SaWr
  Peaxi162Scf00374g00723.1 747 GMFPSHGYTLVEDNGTLKLGWKDLCLFTASAWR 779
                               ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.675393759IPR005202Transcription factor GRAS
PfamPF035141.5E-123420779IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MAKAFPLNGD KCINTATNVG LSSNSSGAKM VRKRAASDME IQTGEENRYL RRPATMGVSH  60
THQLGDLRVC SNSSNLGGHN IMSNNSNYST MQMLPSFTNL CAMTSMGFSN STPNLTYTDA  120
ITSHLIQPQG SQIQNTNINN NNNNQSASVC VFSGLPLFPP ERNRQSGGLL QQPASLTSTV  180
GARIESMDDN ATATAWIDGI IKDLINSSAQ VSVPQLIQNV REIIHPCNPY LASLLEYRLR  240
SLTSNNNNNS TSASQNNDAM DCWRRKEAVP PLASLHQSQH NVNLMQQNIV SQLPDSSNQF  300
LNWPESAPVA PSLNQQQLGN NNNLTATDLS FVSPPLPHPQ VQHPQQQQQE SPHSQQVVDL  360
EQHQKQQQSS STSLSPSTVA DSTAAKAKSP TAAAVPANTY REKKEELRQQ KRDEEGLHLL  420
TLLLQCAEAV SADNLEEANR MLLEVSELST PFGTSAQRVA AYFSEAMSAR LLNSCLGIYA  480
ALPVTSIPLP YTQKMASAFQ VFNGISPFIK FSHFTANQAI QEAFEREDRV HIIDLDIMQG  540
LQWPGLFHIL ASRPGGPPFV RLTGLGNSMD ALEATGKRLS DFAERLGLPF EFLPVADKVG  600
NLDPEKLNVS KREAVAVHWL QHSLYDVTGS DANTLGLLQR LAPKVVTVVE QDLSHAGSFL  660
GRFVEAIHYY SALFDSLGAC YGEESEERHV VEQQLLSKEI RNVLAVGGPS RSGEVKFNNW  720
REKLQQSGFR SLSLAGNAAA QATLLLGMFP SHGYTLVEDN GTLKLGWKDL CLFTASAWRP  780
NSLHISPASR HFSRPNME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04037823382Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089256.10.0protein SCARECROW
RefseqXP_015089257.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A3Q7IJC30.0A0A3Q7IJC3_SOLLC; Uncharacterized protein
STRINGSolyc10g074680.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein