PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00371g00087.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 339aa MW: 38399.2 Da PI: 7.9369 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.7 | 1.5e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G+g+W+t ++ g+ R++k+c++rw +yl Peaxi162Scf00371g00087.1 14 KGPWTAEEDQKLIDYIQKHGSGNWRTLPKNAGLQRCGKSCRLRWSNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w++ Peaxi162Scf00371g00087.1 67 RGKFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.404 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.247 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.5E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.95E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MGRTPCCDKN GLKKGPWTAE EDQKLIDYIQ KHGSGNWRTL PKNAGLQRCG KSCRLRWSNY 60 LRPDIKRGKF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT NIRKKLLRMG 120 IDPVTHSPRL DLLDLTSIFN PSLYNPSHMN NMSKLLGVQP LLNPEILRLA TSLLSSQRQN 180 QNFLLPSNFQ ENQSCDSQVQ NQMTPFVQAS QIQIPIQNIS ICTPLSTPCV PFSSEAQVMQ 240 QPNMEQFPSN LSYFSAQNCQ QNEWQLNNGI ASKMNEHNFP SQNYVFSTLS TPSSSPASFN 300 SNSTCINSSS TTSEGERESY SSSMLNFDIP NIFDVNEFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-33 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244870 | 2e-96 | AC244870.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-30c5 map 10, complete sequence. | |||
GenBank | AC254768 | 2e-96 | AC254768.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-39i21 map 10, complete sequence. | |||
GenBank | HG975522 | 2e-96 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016436111.1 | 1e-172 | PREDICTED: protein ODORANT1-like | ||||
Swissprot | Q9LDR8 | 1e-117 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A1S3X898 | 1e-171 | A0A1S3X898_TOBAC; protein ODORANT1-like | ||||
STRING | Solyc10g005460.2.1 | 1e-168 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-110 | MYB-like 102 |
Publications ? help Back to Top | |||
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