PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00366g00316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 208aa MW: 23339.3 Da PI: 8.8952 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 2e-10 | 51 | 94 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ E +++ +a + + ++ +W Ia+++g g++ ++++ ++ Peaxi162Scf00366g00316.1 51 AWTPKENKKFEQALAVYDKDtpdRWQNIAKYVG-GKSVEEVRQHY 94 7********************************.**********9 PP | |||||||
2 | Myb_DNA-binding | 32.7 | 1.7e-10 | 138 | 181 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ E +++ +a + + ++ +W Ia+++g g++ +++k ++ Peaxi162Scf00366g00316.1 138 AWTPKENKKFEQALAVYDKDtpdRWQNIAKYVG-GKSVEEVKQHY 181 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.567 | 47 | 102 | IPR017884 | SANT domain |
SMART | SM00717 | 7.0E-10 | 48 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-6 | 51 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.03E-9 | 51 | 94 | No hit | No description |
Pfam | PF00249 | 3.1E-9 | 51 | 94 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.21E-13 | 51 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.759 | 134 | 189 | IPR017884 | SANT domain |
SMART | SM00717 | 8.2E-10 | 135 | 187 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 138 | 182 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.98E-9 | 138 | 181 | No hit | No description |
SuperFamily | SSF46689 | 3.74E-13 | 138 | 192 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-9 | 138 | 181 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MTTGMSFDTD STAPSSSCSS ACGYKGDGHL IIRQSKVSIS NNIMASNSLS AWTPKENKKF 60 EQALAVYDKD TPDRWQNIAK YVGGKSVEEV RQHYEILIED LKHIESGGVP FPKYKSGILS 120 YAKAKFLYQP MASNSLSAWT PKENKKFEQA LAVYDKDTPD RWQNIAKYVG GKSVEEVKQH 180 YEILIEDLRH IESGDVPFPK YKSGGKSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-29 | 44 | 205 | 1 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU048883 | 3e-70 | GU048883.1 Capsicum annuum clone BAC CaCM303O04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562162.1 | 1e-46 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | Q1A173 | 6e-31 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A1E5UUT9 | 2e-60 | A0A1E5UUT9_9POAL; Protein RADIALIS-like 3 | ||||
STRING | XP_009603278.1 | 3e-45 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 4e-33 | RAD-like 6 |