PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00365g00043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 168aa MW: 18555 Da PI: 9.473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.5 | 1.2e-16 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g Peaxi162Scf00365g00043.1 26 VYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVYYLRG 75 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.9E-28 | 25 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-34 | 26 | 90 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-10 | 26 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-18 | 26 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.931 | 26 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-7 | 27 | 38 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.24E-24 | 27 | 86 | No hit | No description |
PRINTS | PR00367 | 1.4E-7 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MEVDDGAAVV HGGGGCCTRK RNNERVYKGI RMRKWGKWVA EIREPNKRSR IWLGSYSSPV 60 AAARAYDTAV YYLRGPSAAR LNFPELVVNG DSCGLSELSA ASIRKKAIEV GSTVDAIQNS 120 LAIHDHGHAQ KRKHANGSPA RLKACWFQEK PDLNLKPEPE DTELELVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-13 | 27 | 91 | 6 | 70 | ATERF1 |
3gcc_A | 4e-13 | 27 | 91 | 6 | 70 | ATERF1 |
5wx9_A | 7e-13 | 27 | 84 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339868.1 | 2e-77 | PREDICTED: ethylene-responsive transcription factor RAP2-10-like | ||||
Swissprot | O22174 | 2e-46 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A0V0INJ8 | 6e-76 | A0A0V0INJ8_SOLCH; Putative ethylene-responsive transcription factor RAP2-10-like | ||||
TrEMBL | M0ZXP8 | 6e-76 | M0ZXP8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010228 | 9e-77 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 1e-48 | DREB and EAR motif protein 3 |
Publications ? help Back to Top | |||
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