PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00359g00213.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family CO-like
Protein Properties Length: 412aa    MW: 45199.2 Da    PI: 4.8474
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00359g00213.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.7e-07444539
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              +C+ ++e++ + +C+++   lC +C  ++H+       H++
  Peaxi162Scf00359g00213.1  4 TCEVCGEQRSIVYCRSDAASLCLSCDRNIHSAnalsqrHSR 44
                              7*****************************65677777765 PP
2zf-B_box26.21.6e-084688440
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                               +C++++++++   C + +  lC++C  ++H +      H+++
  Peaxi162Scf00359g00213.1 46 LVCERCNSQPAVSRCVEERISLCQNCDWTGHARsssgstHKRQ 88
                              68*****************************888899999876 PP
3CCT58.91.7e-20355398144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               R  a+lRYkeK+k R+F+K++rY+sRKa+A+ R RvKGrFvk+ 
  Peaxi162Scf00359g00213.1 355 RSDAVLRYKEKKKMRQFDKRVRYASRKARADVRRRVKGRFVKAG 398
                               889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.371147IPR000315B-box-type zinc finger
SMARTSM003368.2E-8447IPR000315B-box-type zinc finger
CDDcd000211.40E-6547No hitNo description
PROSITE profilePS501198.6314390IPR000315B-box-type zinc finger
CDDcd000216.65E-54778No hitNo description
SMARTSM0033634890IPR000315B-box-type zinc finger
PfamPF062033.5E-15355397IPR010402CCT domain
PROSITE profilePS5101715.051355397IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGYTCEVCGE QRSIVYCRSD AASLCLSCDR NIHSANALSQ RHSRTLVCER CNSQPAVSRC  60
VEERISLCQN CDWTGHARSS SGSTHKRQAL SCYTGCPSAA ELSTIWSFLL DDPSVGNLTC  120
EQGMGSMRIN DCRPGESQGS QVKDKTQDMN VAVEANDSRN SDKYTLLMGS SMPSLDNKLE  180
IDELPVGSTN FTWSKVSNSG TKGSNLFDDD PFCEDFNMDE VDLSVENYEE LFGVSLDNPD  240
LLFENEGLRG FFGTKDMSVA ESNCQGVNAA EGSAVGKVST MQPACSNAAS TESTMSCKTE  300
PILCFARQAQ SSLSFSNLTG ESSAGDYQDC GASSMLLMGE PPWCPPESSM PSTSRSDAVL  360
RYKEKKKMRQ FDKRVRYASR KARADVRRRV KGRFVKAGDA YDYDPLSETR SY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768363.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_009768364.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016460896.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016460897.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016460898.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-134COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1S3Z9K50.0A0A1S3Z9K5_TOBAC; zinc finger protein CONSTANS-LIKE 9-like
TrEMBLA0A1U7VPN60.0A0A1U7VPN6_NICSY; zinc finger protein CONSTANS-LIKE 9-like
STRINGXP_009768363.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-124B-box type zinc finger protein with CCT domain