PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00354g00068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 28763.2 Da PI: 5.685 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.3 | 7.4e-13 | 27 | 76 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46 g +T+eEd +++ + +q G+ +W+ Ia+ ++ gRt++++k++w++ Peaxi162Scf00354g00068.1 27 GGFTEEEDNIILTLYTQIGSSsilvkiRWSVIASNLQ-GRTDNDVKNYWNT 76 569**********************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.368 | 1 | 20 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-12 | 6 | 32 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.05E-20 | 6 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.826 | 21 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-10 | 25 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-10 | 27 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.08E-10 | 29 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-16 | 33 | 79 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MFSGLKRCGK SCRLRWLNYL RPDIKHGGFT EEEDNIILTL YTQIGSSSIL VKIRWSVIAS 60 NLQGRTDNDV KNYWNTKLKK KLLEAAATNT LSNSNAFTHD KTYMNTIPRT CYGTDSTNCS 120 NMKFYTFSHA MDTNLLGHSS RQLFPLLPEL MEIQENGILQ QAEEVKCSSL ENSFASFSGN 180 IGVVQGNEED GSLMSLSSGI SSSYYYDLLN GFNFQENVVM GVNTNFSNYS SNSNLLQLQA 240 NIPDSTDQPF KGFETY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-17 | 7 | 82 | 40 | 108 | B-MYB |
1h8a_C | 1e-16 | 7 | 82 | 60 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799606.1 | 2e-68 | PREDICTED: transcription factor RAX2-like | ||||
Refseq | XP_016453189.1 | 2e-68 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A1S3YLQ2 | 4e-67 | A0A1S3YLQ2_TOBAC; transcription factor RAX2-like | ||||
TrEMBL | A0A1U7YCC4 | 4e-67 | A0A1U7YCC4_NICSY; transcription factor RAX2-like | ||||
STRING | XP_009799606.1 | 7e-68 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57620.1 | 8e-33 | myb domain protein 36 |