PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00345g00128.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | Dof | ||||||||
Protein Properties | Length: 264aa MW: 28905.9 Da PI: 8.3573 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.1 | 2.3e-39 | 42 | 103 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++a++cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn++sss Peaxi162Scf00345g00128.1 42 KDQAVNCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNRRSSS 103 6899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-23 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-33 | 43 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.733 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDSTTPFSQD IGLVKSMAAE IAPANVITCS RPETLEKKRP DKDQAVNCPR CNSINTKFCY 60 YNNYSLTQPR YFCKTCRRYW TEGGTLRNVP VGGGSRKNRR SSSVNSSSMS SQKLPDLNPN 120 PNVSHQNPDK INTVGRNQDL NLGFQTYVAH DHQFHGTPQF LELPKMDSGN NANNHLALDL 180 NALYTSGFPF QELKPTGGNS DQTAAALISY SNGVQENGGT RNMFPLGGLK QFSGTSEVDN 240 HQDTNKGLEN STAGYWNGML GGGP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233120 | 7e-53 | AC233120.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-101i8 map 1, complete sequence. | |||
GenBank | HG975440 | 7e-53 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 7e-53 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760286.1 | 1e-112 | PREDICTED: dof zinc finger protein DOF2.5 isoform X1 | ||||
Refseq | XP_016463171.1 | 1e-112 | PREDICTED: dof zinc finger protein DOF2.5-like isoform X2 | ||||
TrEMBL | A0A1S3ZFV5 | 1e-110 | A0A1S3ZFV5_TOBAC; dof zinc finger protein DOF2.5-like isoform X2 | ||||
TrEMBL | A0A1U7V5N1 | 1e-110 | A0A1U7V5N1_NICSY; dof zinc finger protein DOF2.5 isoform X1 | ||||
STRING | XP_009760286.1 | 1e-111 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 1e-37 | Dof family protein |