PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00342g00113.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 537aa MW: 57991.3 Da PI: 5.186 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++v ++G g+W+++ ++ g+ R++k+c++rw ++l Peaxi162Scf00342g00113.1 37 KGPWTSAEDAILVEYVMKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 84 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 90 | 133 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T eE+ l++++++++G++ W++ a++++ gRt++++k++w++ Peaxi162Scf00342g00113.1 90 KGAFTLEEERLIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 133 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.234 | 32 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-30 | 34 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-14 | 36 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 37 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-24 | 38 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.73E-11 | 39 | 84 | No hit | No description |
PROSITE profile | PS51294 | 25.35 | 85 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-16 | 89 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 90 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-25 | 92 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.13E-12 | 92 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MSITSETDDW MTSKVDMDSP DEANGGGNVG GSLPLKKGPW TSAEDAILVE YVMKHGEGNW 60 NAVQKHSGLA RCGKSCRLRW ANHLRPDLKK GAFTLEEERL IIELHAKMGN KWARMAAELP 120 GRTDNEIKNY WNTRIKRLQR AGLPVYPPDI CFLASQNKQN EELAGLSSTD AQHPGLVATN 180 NFDIPPVEFK NLELNQLLCP PAHVEIPASS LLDIPASGFL AQVHSAPYSS TSLLSTVHPS 240 KRIRGSESMF SGSNGDLFLA SCQYQNGGSL IAQPLGFSSY NHNLTYDGQQ SFSNVIPGSH 300 APLNGNSSTS EPTWALKVEL PSLQNQTANW DSPSSPLHSL ESVDTLIQSP LAGHSESVSL 360 SPRNSGLLDA VLYGSQTMNS SKDNSNQAKE ETSADAVGNS CPDLLEKGWE TYGDPISPLS 420 RLPASVFTEC TPTTGNSLHE LQSTSRMPGE NGCNVKQENA DQAPSDGKDD MLNQTIFASN 480 CSSPKTQHTK NNLALKNAFG SGFFDDYGWD CKQVHSVATS SGQACGRDSA WDAMSAM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-32 | 35 | 137 | 5 | 106 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158629.1 | 0.0 | PREDICTED: transcription factor GAMYB-like isoform X1 | ||||
TrEMBL | A0A4D6FBN6 | 0.0 | A0A4D6FBN6_PETHY; MYB33b | ||||
STRING | PGSC0003DMT400058426 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 7e-87 | myb domain protein 33 |