 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Peaxi162Scf00337g00011.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 318aa MW: 35631.7 Da PI: 10.1379 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peaxi162Scf00337g00011.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 337.4 | 3.7e-103 | 1 | 280 | 1 | 299 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd..........maflqrdkalaernk 72
mdddg + rn+gyyep+ lk +lglqlmss+ +rdak+ r n + + ++ +++rd +++ rd+++++
Peaxi162Scf00337g00011.1 1 MDDDGLNMRNWGYYEPS--LKGHLGLQLMSSVVDRDAKPyltRRDNPIMLGANGMFHSRDsivpdaplshIDY-VRDSWINH--- 79
9*****99*******99..*********************99888888*******************999999.99****99... PP
GAGA_bind 73 alverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrak 157
++k+l++ + ++++vl++++ +s+q++++p+++++ +e+++++ke+ +k++ ++
Peaxi162Scf00337g00011.1 80 -----RDKFLHMFPG--------NPYTSVLPEASGSHSMQMVQQPDVTNDVRV-----------NVEEPNVKKESGPSKRKTGGA 140
.....7899999993........3578999***********665555443322...........234577788888888888999 PP
GAGA_bind 158 kpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvy 242
+pk++kakk kk s+ +k++ +++ +rsk kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+y
Peaxi162Scf00337g00011.1 141 TPKAPKAKKSKKVSSGPKENGNRSV--QRSKPAKKSMDIVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTSISMY 223
**************99999999888..79******************************************************** PP
GAGA_bind 243 PLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvt 299
PLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+DL++hWAkHGtnkf t
Peaxi162Scf00337g00011.1 224 PLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWAKHGTNKFYT 280
*******************************************************87 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MDDDGLNMRN WGYYEPSLKG HLGLQLMSSV VDRDAKPYLT RRDNPIMLGA NGMFHSRDSI 60
VPDAPLSHID YVRDSWINHR DKFLHMFPGN PYTSVLPEAS GSHSMQMVQQ PDVTNDVRVN 120
VEEPNVKKES GPSKRKTGGA TPKAPKAKKS KKVSSGPKEN GNRSVQRSKP AKKSMDIVIN 180
GIDMDISGIP IPVCSCTGTP QQCYRWGCGG WQSACCTTSI SMYPLPMSTK RRGARIAGRK 240
MSQGAFKKVL EKLAAEGYNF ANPIDLRTHW AKHGTNKFYT DLDGFWKRHC KEIHKKKRLS 300
SAETATSIEY YKMWTSNS
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982300 | 0.0 | FJ982300.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds. |
