PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00334g00123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 25703.8 Da PI: 6.9653 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 96 | 146 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +g+++AeIrd + ng r++lg+f+taeeAa a+++a+ +++g Peaxi162Scf00334g00123.1 96 HYVGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDTAEEAALAYDQAAFSMRG 146 79*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 95 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 96 | 146 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.63E-30 | 96 | 154 | No hit | No description |
PROSITE profile | PS51032 | 22.352 | 96 | 154 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-38 | 96 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-22 | 96 | 155 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.5E-10 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-10 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEMKISSHDQ YFPNLDFFQD QYSFLSNELI FMDYDNLTNP WELDSDLNDR EHQVQRSSSY 60 SETINSSKGS NELEEVTSYS IKRKNANKQE KDDERHYVGV RKRPWGKYAA EIRDSTRNGI 120 RVWLGTFDTA EEAALAYDQA AFSMRGTSAL LNFPMGKVQE SLEKIKYSCQ DGLSPAAALK 180 ETHKMRMKNV KRKRNRKKKK TVLVFEDLGV DLLEELLVST SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-29 | 95 | 155 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240194 | 1e-100 | AC240194.8 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-118f23 map 10, complete sequence. | |||
GenBank | AC245345 | 1e-100 | AC245345.7 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-35f20 map 10, complete sequence. | |||
GenBank | HG975522 | 1e-100 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016465665.1 | 1e-89 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 3e-52 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1S3ZM98 | 3e-88 | A0A1S3ZM98_TOBAC; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_009625479.1 | 8e-89 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-35 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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