PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00330g00619.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 913aa    MW: 104395 Da    PI: 7.5774
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00330g00619.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.33.8e-1081064692367
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                 lL++cA+av+++d + a+ lL+++++ +sp gd +qRla +f+ +L+arla++++++ykal  ++t+    +++l+a++l+  
  Peaxi162Scf00330g00619.1 106 SALLISCAQAVAAEDCRSANDLLKQIRQYSSPFGDGNQRLANCFADGLEARLAGTGNHIYKALVDKRTP---AADNLKAYHLYLS 187
                               579************************************************************999999...9************ PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                               ++P+ k+s ++ N++I+  +e++++vHiiDf+i +G+QWp+++q +asR++gpp+lRiTg++ p++g   +e++eetg+rLa++A
  Peaxi162Scf00330g00619.1 188 TCPYSKISSFVSNKTIMTKAEKATKVHIIDFGILYGFQWPTFIQRIASREGGPPKLRITGIEFPQPGfrPAERIEETGRRLADYA 272
                               ******************************************************************9****************** PP

                      GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                               ++++v+fe+++ +ak++e+++le+L+++++E l+Vn++++l++l+des+  es r+ vL+l+++++P+++++   +  ++++ F+
  Peaxi162Scf00330g00619.1 273 QSFNVSFEYRA-IAKKWETISLEDLELESDEFLVVNCMYRLKNLHDESGLAESSRTIVLNLIREIKPDIFIHGIVNGTYSAPFFV 356
                               ***********.7************************************************************************ PP

                      GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                               +rf   l ++salfd le+ +pre  er+++Ere++g e+ nv+aceg er+er et+++W+ r  +a Fk++p++ ++++ a  
  Peaxi162Scf00330g00619.1 357 TRFKAVLFHFSALFDILETVVPREIPERMVIEREIFGMEALNVIACEGCERVERPETYRQWQGRNLRARFKQIPFEREIMNRAIE 441
                               ************************************************************************************* PP

                      GRAS 340 llrkvksdgyrveeesgslvlgWkdrpL 367
                                +r  + + + ++ee+++l+lgWk+r +
  Peaxi162Scf00330g00619.1 442 KVRSGYHKDFVINEEDQWLLLGWKGRII 469
                               ***999888****************976 PP
2GRAS357.51.9e-1095308992373
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                 lL++cA+a++++d + a+ lL+++++++sp gd +qRla +f+ +L+arl+++++++ykal  ++ts    ++ l+a++l+  
  Peaxi162Scf00330g00619.1 530 SALLISCAQAIAAEDCRGANDLLKQIRQHSSPFGDGNQRLANCFADGLEARLVGTGNHIYKALVDKRTS---GDDILKAYHLYLS 611
                               579************************************************************999999...9************ PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                                +P+ k+s+++ N++I+  +e++++vHiiDf+i +G+QWpa++q +a R++gpp+lRiTg++ p++g   +e++eetg+rLa +A
  Peaxi162Scf00330g00619.1 612 SCPYSKISNFVSNKTIMTKAEKATKVHIIDFGILYGFQWPAFIQHIAFREGGPPKLRITGIEFPQPGfrPAERIEETGRRLAAYA 696
                               ******************************************************************9****************** PP

                      GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                               +++++ fe+++ +ak++e+++le+L+++++E l+Vn++++l++l+des+  es r+ vL+l+++++P+++++   +  ++++ F+
  Peaxi162Scf00330g00619.1 697 QRFNILFEYHA-IAKKWETISLEDLDLESDEFLVVNCMYRLKNLHDESGLGESSRTIVLNLIRKINPDIFIHGIVNGTYSAPFFV 780
                               ***********.7************************************************************************ PP

                      GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                               +rf   l ++salfd le+ +pre  er+++Ere++g e+ nv+aceg er+er et+++W+ r ++a F+++p++ ++ + a  
  Peaxi162Scf00330g00619.1 781 TRFKAVLFHFSALFDILETVVPREIPERMVIEREIFGMEALNVIACEGCERVERPETYRQWQGRNRRARFTQIPFEREIINRAIE 865
                               ************************************************************************************* PP

                      GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                +r  + + + ++ee+++l+lgWk+r ++++S W
  Peaxi162Scf00330g00619.1 866 KVRSSYHKDFVINEEDQWLLLGWKGRIMYALSYW 899
                               ******888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.74379456IPR005202Transcription factor GRAS
PfamPF035141.3E-105106469IPR005202Transcription factor GRAS
PROSITE profilePS5098562.209503880IPR005202Transcription factor GRAS
PfamPF035146.7E-107530899IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MEPKFNLNEF PLENDSLPNS SDLLKSNELR FGAIDPDQNL VNSSRLENTT SKQAAVYAES  60
TTLSEEFDIV LLHSMEKRAE ATEAYRKSLK NASSVPTDKK HVKDLSALLI SCAQAVAAED  120
CRSANDLLKQ IRQYSSPFGD GNQRLANCFA DGLEARLAGT GNHIYKALVD KRTPAADNLK  180
AYHLYLSTCP YSKISSFVSN KTIMTKAEKA TKVHIIDFGI LYGFQWPTFI QRIASREGGP  240
PKLRITGIEF PQPGFRPAER IEETGRRLAD YAQSFNVSFE YRAIAKKWET ISLEDLELES  300
DEFLVVNCMY RLKNLHDESG LAESSRTIVL NLIREIKPDI FIHGIVNGTY SAPFFVTRFK  360
AVLFHFSALF DILETVVPRE IPERMVIERE IFGMEALNVI ACEGCERVER PETYRQWQGR  420
NLRARFKQIP FEREIMNRAI EKVRSGYHKD FVINEEDQWL LLGWKGRIIL ENTTSKQAAV  480
YAESTTLSEE FDIVLLHSME KRAEATEAYR KSLKNASSVP TDKKHVKDLS ALLISCAQAI  540
AAEDCRGAND LLKQIRQHSS PFGDGNQRLA NCFADGLEAR LVGTGNHIYK ALVDKRTSGD  600
DILKAYHLYL SSCPYSKISN FVSNKTIMTK AEKATKVHII DFGILYGFQW PAFIQHIAFR  660
EGGPPKLRIT GIEFPQPGFR PAERIEETGR RLAAYAQRFN ILFEYHAIAK KWETISLEDL  720
DLESDEFLVV NCMYRLKNLH DESGLGESSR TIVLNLIRKI NPDIFIHGIV NGTYSAPFFV  780
TRFKAVLFHF SALFDILETV VPREIPERMV IEREIFGMEA LNVIACEGCE RVERPETYRQ  840
WQGRNRRARF TQIPFEREII NRAIEKVRSS YHKDFVINEE DQWLLLGWKG RIMYALSYWI  900
PTCKGHYHKL ALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-481098998374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254751.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809331e-171SCL9_ARATH; Scarecrow-like protein 9
TrEMBLJ3M3A20.0J3M3A2_ORYBR; Uncharacterized protein
STRINGOB05G10760.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-165GRAS family protein