PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00330g00063.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 763aa    MW: 86537.3 Da    PI: 6.1958
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00330g00063.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3772.4e-1153907611374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lL++cA+av+++d + a++lL+++++++sp gd +qRla++f+ +L+arla+++s++ kal  ++ts    ++ l+a++l+ 
  Peaxi162Scf00330g00063.1 390 LRTLLITCAQAVAADDCRSANELLKQIRQHSSPFGDGNQRLAHCFADGLEARLAGTGSQIHKALVNKRTS---AADFLKAYHLYL 471
                               6789************************************************************999998...9*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                 +P+ k+s ++ N++I+  + +++rvH+iDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g   +e++eetg+rL+++
  Peaxi162Scf00330g00063.1 472 ASCPFKKMSGFASNKTIMMKAGNATRVHVIDFGILYGFQWPTLIQRIAAREGGPPKLRITGIEFPQPGfrPAEKIEETGRRLSDY 556
                               *******************************************************************9***************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A++++vpfe+++ +ak++e+++le+L++++++ l+Vn+ ++ ++l+de+v  es r+ vL+l+++++P+++++   +  ++++ F
  Peaxi162Scf00330g00063.1 557 AKSFDVPFEYHA-IAKKWETIRLEDLKLEKDDFLVVNCLYRFKNLHDETVLAESSRTLVLNLIRKINPDIFIHGIVNGAYSAPFF 640
                               ************.7*********************************************************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               ++rf eal ++salfd+lea++pre  er+ +Ere++gre+ nv+aceg er+er et+++W+ r  +a F+++p++ ++++ a 
  Peaxi162Scf00330g00063.1 641 VTRFREALFHFSALFDMLEANVPREYPERMLIEREIFGREALNVIACEGWERVERPETYKQWQVRNLRARFTQIPFEREVMNRAI 725
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 ++  + + + ++e++++l+lgWk+r+++++S+W+
  Peaxi162Scf00330g00063.1 726 EKVSSSYHKDFVIDEDNKWLLLGWKGRTIYALSCWT 761
                               ***9999888*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.712364741IPR005202Transcription factor GRAS
PfamPF035148.5E-113390761IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MDPRFNRFPS SVNGFNLEKQ SLPVFSDHWK NNEPRFEAIY QDQKLVNGPR FENSFVQHNV  60
GRVQSLSDEP LPTNTTLTSD TGDDYNEDFD FSDTVLSYIN QMLMEEDMED KSHMLQESLE  120
LQTKEKSFYE ALGKKYPPSP QKNLSVTNQN CEIPDEYCSG SLYNSTINSS DSSGYLIDPS  180
VVNNSNYYNF SYVQSLSVCN GTYSSISSSS SLTNIADGFL DSPVSPLHTP DIYNESHPIW  240
NFRKGVEEAS KFLPTNNNLL DNVDINDLLA LEQKEESGCM AAQVGKRDEG ETSATGPRGR  300
KNAHRDDTDL EEERSSKQAA VYTESTVRSE EFDIVLLHSM GKGGEALAAL RETLKNARTK  360
TTMQNGQSKG FTGGKARGKK QNGKKEVVDL RTLLITCAQA VAADDCRSAN ELLKQIRQHS  420
SPFGDGNQRL AHCFADGLEA RLAGTGSQIH KALVNKRTSA ADFLKAYHLY LASCPFKKMS  480
GFASNKTIMM KAGNATRVHV IDFGILYGFQ WPTLIQRIAA REGGPPKLRI TGIEFPQPGF  540
RPAEKIEETG RRLSDYAKSF DVPFEYHAIA KKWETIRLED LKLEKDDFLV VNCLYRFKNL  600
HDETVLAESS RTLVLNLIRK INPDIFIHGI VNGAYSAPFF VTRFREALFH FSALFDMLEA  660
NVPREYPERM LIEREIFGRE ALNVIACEGW ERVERPETYK QWQVRNLRAR FTQIPFEREV  720
MNRAIEKVSS SYHKDFVIDE DNKWLLLGWK GRTIYALSCW TPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-513737621379Protein SCARECROW
5b3h_D2e-513737621379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804922.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1U7YLH50.0A0A1U7YLH5_NICSY; scarecrow-like protein 9
STRINGXP_009804922.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein