PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00327g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 545aa MW: 60374 Da PI: 6.4692 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 180 | 236 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Peaxi162Scf00327g00008.1 180 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 236 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.5 | 4.5e-15 | 281 | 330 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Peaxi162Scf00327g00008.1 281 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 330 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.49E-20 | 180 | 246 | No hit | No description |
Pfam | PF00847 | 9.1E-9 | 180 | 236 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-15 | 180 | 246 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-12 | 181 | 245 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-23 | 181 | 250 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.504 | 181 | 244 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 182 | 193 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.42E-24 | 279 | 338 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-18 | 279 | 339 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-18 | 280 | 338 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-31 | 280 | 344 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.296 | 280 | 338 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-9 | 281 | 330 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 320 | 340 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 545 aa Download sequence Send to blast |
MNSNNWLSFP LSPTHSSLPP HLQTAQSHHF SLGLVNETID NPFHNQEWNL INTQGSNEAP 60 EVADFLGVNN KSENQSELIP YNEIQSNDSG YLFQNNSLMP VQNALDVTPT SNYDLQENAC 120 NIQSLTLSMG SGKGSTTETS ASPSATATAS ASASGENSIN TSIVEAAPRR TLDTFGQRTS 180 IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQGGYDKE EKAARAYDLA ALKYWGTSTT 240 TNFPISNYEK ELEDMKHMTR QEFVASIRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV 300 AGNKDLYLGT FTTEEEAAEA YDIAAIKFRG LNAVTNFDMN RYDVKAILES NTLPIGGGAA 360 KRLKEAQALE SSRKRDQEMI ALNSSFQYGN SSSSNPLQAY PLMQQPFESH QPMLTLQNHE 420 ISPYNIQESS SHFHQSSSHL QTQLQLQNNS HQFYNNYLQS NPVFLHGLME NNGGGSSSGS 480 YNTVGYFGNS TGLGMTSNSP SGNEEVHALV KVDYDNLPTA GSYNGTWSGE SVQGSNPSVF 540 SMWNE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016557169.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2G2VMY9 | 0.0 | A0A2G2VMY9_CAPBA; AP2-like ethylene-responsive transcription factor PLT1 | ||||
STRING | XP_009801579.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |