PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00314g01041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | AP2 | ||||||||
Protein Properties | Length: 371aa MW: 41868 Da PI: 7.3221 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.2 | 1.8e-12 | 57 | 114 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g+ Peaxi162Scf00314g01041.1 57 SIYRGVTRHRWTGRYEAHLWDkNCWNEtQNKKGRQGAYDDEEAAAHAYDLAALKYWGH 114 57*******************99999998988888********************997 PP | |||||||
2 | AP2 | 51.2 | 3.2e-16 | 156 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Peaxi162Scf00314g01041.1 156 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 207 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-8 | 57 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-15 | 57 | 123 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-13 | 58 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-20 | 58 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.755 | 58 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-6 | 59 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.10E-23 | 156 | 217 | No hit | No description |
Pfam | PF00847 | 5.9E-12 | 156 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 156 | 217 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 157 | 216 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-24 | 157 | 221 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.334 | 157 | 215 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-6 | 197 | 217 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MAKTSKANQK NNSTTTSSTS SNKTVANKNA SSSNSAIGKA KRTRKSVPRD SPPQRSSIYR 60 GVTRHRWTGR YEAHLWDKNC WNETQNKKGR QGAYDDEEAA AHAYDLAALK YWGHDTILNF 120 PLSTYEKELK EMEAQSKEEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN 180 KYLYLGTYAT QEEAATAYDM AAIEYRGLNA VTNFDLSRYI KWLRPSNQTN TSPINNPSNI 240 EPNPNIDDIN LMPNTKEEVD FSFEHHQQQQ QSSSSDVTDV ALPRPAGSAT TASALGLLLQ 300 SSKFKEMLER TSAADCPETP PEPDRPRRSF PDDIQTYFDC QESSSYVEEH DIIFGDLDSF 360 ASPMFQCELD S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009757386.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Refseq | XP_016483746.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-122 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A1S4B4H3 | 0.0 | A0A1S4B4H3_TOBAC; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A1U7UX98 | 0.0 | A0A1U7UX98_NICSY; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
STRING | XP_009757386.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1815 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 3e-87 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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