PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00314g00633.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LFY
Protein Properties Length: 412aa    MW: 46268 Da    PI: 6.6815
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00314g00633.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY644.12.1e-19613941386
                   FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap.........leaaaaaaarklreleelfkayGvryltvakiaelGftvs 76 
                               mdpeafsaslfkwdpr a+ +pp+rlle  a +++p         l  a ++ +r+l +lee+f+ayG+ry+t+aki+elGftv+
  Peaxi162Scf00314g00633.1   1 MDPEAFSASLFKWDPRGAM-PPPNRLLEAVAPPQPPppplpppqpLPPAYSIRTRELGGLEEMFQAYGIRYYTAAKITELGFTVN 84 
                               9**************9876.77888887777666556677655444445555555566*************************** PP

                   FLO_LFY  77 tLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqe.ekea 160
                               tL+dmkd+eldd+m+sls+ifr++llvGeryGikaa+raerrrleeee   +rr++ls+  +++ldalsqeglseepvq+ e+ea
  Peaxi162Scf00314g00633.1  85 TLLDMKDDELDDMMNSLSQIFRWELLVGERYGIKAAIRAERRRLEEEE--GRRRHILSDGGTNVLDALSQEGLSEEPVQQqEREA 167
                               **********************************************87..999999**********************9956668 PP

                   FLO_LFY 161 agsggeglgeaelvaaee.kkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedge.erqrehPfivtepgevar 243
                               agsgg+g +++e+va    + +++++kk    +++r ++ e+ ++++e +e++ed + +++g +g  erqrehPfivtepgevar
  Peaxi162Scf00314g00633.1 168 AGSGGGG-TAWEVVAPGGgRMRQRRRKKVVVGRERRGSSMEEDEDTEEGQEDNEDYNINNEGGGGIsERQREHPFIVTEPGEVAR 251
                               8887777.99999998884556666666666688888877766666666666676666665555544****************** PP

                   FLO_LFY 244 gkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafke 328
                               gkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnqvfr+akkagasyinkPkmrhYvhCYalhcLde+asnalrrafke
  Peaxi162Scf00314g00633.1 252 GKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRFAKKAGASYINKPKMRHYVHCYALHCLDEDASNALRRAFKE 336
                               ************************************************************************************* PP

                   FLO_LFY 329 rgenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                               rgenvGawrqacykplvaiaarqgwdida+fn hprLsiWYvPtkLrqLCh ers+a+
  Peaxi162Scf00314g00633.1 337 RGENVGAWRQACYKPLVAIAARQGWDIDAIFNGHPRLSIWYVPTKLRQLCHSERSNAA 394
                               *******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.6E-2091394IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDPEAFSASL FKWDPRGAMP PPNRLLEAVA PPQPPPPPLP PPQPLPPAYS IRTRELGGLE  60
EMFQAYGIRY YTAAKITELG FTVNTLLDMK DDELDDMMNS LSQIFRWELL VGERYGIKAA  120
IRAERRRLEE EEGRRRHILS DGGTNVLDAL SQEGLSEEPV QQQEREAAGS GGGGTAWEVV  180
APGGGRMRQR RRKKVVVGRE RRGSSMEEDE DTEEGQEDNE DYNINNEGGG GISERQREHP  240
FIVTEPGEVA RGKKNGLDYL FHLYEQCRDF LIQVQNIAKE RGEKCPTKVT NQVFRFAKKA  300
GASYINKPKM RHYVHCYALH CLDEDASNAL RRAFKERGEN VGAWRQACYK PLVAIAARQG  360
WDIDAIFNGH PRLSIWYVPT KLRQLCHSER SNAAAAASTS VSGGGVDHLP HF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1092334033173PROTEIN LEAFY
2vy2_A1e-1092334033173PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the specification of floral meristem identity.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0301710.0AF030171.1 Petunia x hybrida ALF protein (alf) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563047.10.0PREDICTED: floricaula/leafy homolog 1 isoform X1
SwissprotO226210.0ALF_PETHY; Protein ALF
TrEMBLA0A1U8FV460.0A0A1U8FV46_CAPAN; floricaula/leafy homolog 1 isoform X1
STRINGXP_009614003.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66682333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-104floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Souer E, et al.
    Genetic control of branching pattern and floral identity during Petunia inflorescence development.
    Development, 1998. 125(4): p. 733-42
    [PMID:9435293]