PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00314g00028.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 320aa    MW: 36285.2 Da    PI: 5.7401
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00314g00028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.55.4e-39521511100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++++l++  +++am+++++++++ra+dPv G++++i++lq+
  Peaxi162Scf00314g00028.1  52 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLDQPLKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQR 136
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               +++  kael+ + ++
  Peaxi162Scf00314g00028.1 137 HIDYCKAELDIVLHQ 151
                               *********988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.19851152IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3652147IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTTISTPIPN HHHNTHAFTP ANNNLNHNYT KHANNNNNNN KNVLLRVSGA QACAACKYQR  60
RKCAPDCVLA PYFPHDRQRQ FLNAHKLFGV SNITKIIRHL DQPLKDEAMR TIIFQSDVRA  120
NDPVGGCYRI IRDLQRHIDY CKAELDIVLH QLAYCRAQAV AAAASEQQQI LADHATEESF  180
NDNNCDGVVN QTDNLVNNTS SYEQPIDYQP HSYYIHPRCQ QADDQQYDDL QDGHLDLADI  240
NFPWSLHEQE STSTSTPAVI NQPSVHDQCD NIKPILEEIS GYAEEGLSFE HEQTFDQRLV  300
IAIISSFPTE LVFLISTPVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-25491467105LOB family transfactor Ramosa2.1
5ly0_B8e-25491467105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019228565.11e-162PREDICTED: LOB domain-containing protein 22-like
TrEMBLA0A1S3XPA61e-157A0A1S3XPA6_TOBAC; LOB domain-containing protein 22-like
STRINGXP_009623735.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99262126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.17e-51LOB domain-containing protein 22