PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00311g01112.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 287aa    MW: 32375.2 Da    PI: 8.1904
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00311g01112.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd  l+ +++++G g +W + +++ g++R++k+c++rw++yl
  Peaxi162Scf00311g01112.1 14 RGPWSPEEDATLKSYIEKHGIGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                              89******************999************************97 PP
2Myb_DNA-binding39.51.3e-1269111246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Peaxi162Scf00311g01112.1  69 GEFSDEEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                               789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.253962IPR017930Myb domain
SuperFamilySSF466894.49E-2711109IPR009057Homeodomain-like
SMARTSM007171.1E-101364IPR001005SANT/Myb domain
PfamPF002495.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-251569IPR009057Homeodomain-like
CDDcd001675.22E-81662No hitNo description
PROSITE profilePS5129422.28363117IPR017930Myb domain
SMARTSM007178.8E-1267115IPR001005SANT/Myb domain
PfamPF002492.5E-1169111IPR001005SANT/Myb domain
CDDcd001678.48E-870113No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRAPCCDKE NVKRGPWSPE EDATLKSYIE KHGIGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAL  120
DLSSQQISPN YQSTPTYHSS ISALQSSSHN SSLYSSPSPS LSLKSTAYKY TNSHFYPIST  180
ATNFPCNETI ISSPSSKFLN SPSYMYNGVE EKQSNSKFLI TNGNDYAEKK PKGKGCYDGE  240
NSLECSLEEI KKLISTTSIH DNNFNNFFSD ENKIEEQVMM STDVDHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2285911e-106JQ228591.1 Nicotiana tabacum ntrax mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602472.11e-137PREDICTED: transcription factor RAX2-like
TrEMBLA0A1S3YU111e-135A0A1S3YU11_TOBAC; transcription factor RAX2-like
STRINGXP_009602472.11e-136(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-75myb domain protein 36