PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00304g01018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 28656.2 Da PI: 8.0685 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.8 | 1.2e-13 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l ++ ++ +W+ ++ g+ Rt+k+c++rw +yl Peaxi162Scf00304g01018.1 15 KGPWSPEEDQKLTSYIMKYRIWNWNQMPKFAGLSRTGKSCRLRWVNYL 62 79*****************999************************97 PP | |||||||
2 | Myb_DNA-binding | 41.5 | 3e-13 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE e ++ + lG++ W++I+++++ gRt++++k++++++l Peaxi162Scf00304g01018.1 68 RGPFSMEEVETVIRMYQSLGNR-WSAISKELP-GRTDNEIKNFFHTHL 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 10.395 | 10 | 62 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 6.36E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.30E-8 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.078 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-12 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.41E-8 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MQKLHNKNMG TNSKKGPWSP EEDQKLTSYI MKYRIWNWNQ MPKFAGLSRT GKSCRLRWVN 60 YLRPDLKRGP FSMEEVETVI RMYQSLGNRW SAISKELPGR TDNEIKNFFH THLKKQFGTK 120 VNDHVQVKRK ATCKKSKKAK ELEMRTRGET QEKPNQSLDM SSSDITFDEN HNWDFANFSE 180 TSSEDNYCVN SLGAVPIIDS MVILESNPTT SEDPDFSVQD FRDETSINSS NVDFWLELYM 240 AAENLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 15 | 119 | 7 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078427.1 | 3e-91 | transcription factor MYB14-like | ||||
TrEMBL | M1BRU7 | 1e-88 | M1BRU7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400051513 | 2e-89 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 9e-49 | myb domain protein 14 |