PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00304g00919.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 470aa    MW: 54454.1 Da    PI: 6.6853
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00304g00919.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.8e-1359104148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ eE e +++  + lG++ W++I+++++ gRt++++k++++++l
  Peaxi162Scf00304g00919.1  59 RGPFSMEEVETIIRMYQSLGNR-WSAISKELP-GRTDNEIKNFFHTHL 104
                               89********************.*********.************986 PP
2Myb_DNA-binding40.37.5e-13239286148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+W++eEd++l  ++ ++   +W+  ++  g+ Rt+k+c++rw +yl
  Peaxi162Scf00304g00919.1 239 KGPWSPEEDLKLTSYIMKYRIWNWNQMPKFAGLSRTGKSCRLRWVNYL 286
                               79*****************999************************97 PP
3Myb_DNA-binding40.27.8e-13292337148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ eE e  ++  + lG++ W++I+++++ gRt++++k++++++l
  Peaxi162Scf00304g00919.1 292 RGPFSMEEVETVIRMYQSLGNR-WSAISKELP-GRTDNEIKNFFHTHL 337
                               89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.0752053IPR017877Myb-like domain
SuperFamilySSF466898.17E-1823100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-82354IPR009057Homeodomain-like
PROSITE profilePS5129417.52854108IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-1956107IPR009057Homeodomain-like
SMARTSM007173.8E-1358106IPR001005SANT/Myb domain
PfamPF002495.4E-1259104IPR001005SANT/Myb domain
CDDcd001673.63E-861104No hitNo description
PROSITE profilePS5009010.127234286IPR017877Myb-like domain
SuperFamilySSF466896.13E-27236333IPR009057Homeodomain-like
SMARTSM007178.7E-11238288IPR001005SANT/Myb domain
PfamPF002491.4E-11239286IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-21240293IPR009057Homeodomain-like
CDDcd001673.13E-7241286No hitNo description
PROSITE profilePS5129420.078287341IPR017930Myb domain
SMARTSM007171.0E-12291339IPR001005SANT/Myb domain
PfamPF002491.5E-11292337IPR001005SANT/Myb domain
CDDcd001677.06E-8294337No hitNo description
Gene3DG3DSA:1.10.10.601.2E-22294340IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MVLLAAAMKN MQEPYDKNVG LNSNKGAWSP EEDQKLISYI MKYRIWNWNQ IPKFADLKRG  60
PFSMEEVETI IRMYQSLGNR WSAISKELPG RTDNEIKNFF HTHLKKQFGT KVNDHVQVKR  120
KASCKKSKKA KELEMRTRGE TQEKPNQSLD MSSSDITFDE NHNWDFTNFS ETSSEDNYCT  180
VNSLVNQEAV PIIDSMVILE SNPTTSENHD LYVQDFMDET GINSSNKLHN KNMGTNSKKG  240
PWSPEEDLKL TSYIMKYRIW NWNQMPKFAG LSRTGKSCRL RWVNYLRPDL KRGPFSMEEV  300
ETVIRMYQSL GNRWSAISKE LPGRTDNEIK NFFHTHLKKQ FGTKVNDHVQ VKRKATCKKS  360
KKAKELEMRT RGETQEKPNQ SLDMSSSDIT FDENHNWDFA NFSETSSEDN YCVNSLGAVP  420
IIDSMVILES NPTTSEDPDF SVQDFRDETS INSSNVDFWL ELYMAAENLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-2043411128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078427.11e-87transcription factor MYB14-like
TrEMBLM1BRU72e-84M1BRU7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000515133e-85(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.14e-46myb domain protein 58