PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00304g00074.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 258aa    MW: 30272.6 Da    PI: 8.5801
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00304g00074.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-13853248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              g W   Ede l+ +v ++G+++W++I++ +  ++t+kqck rw+ +l
  Peaxi162Scf00304g00074.1  8 GVWKNTEDEVLKALVMKYGKNHWARISSLLV-HKTAKQCKARWYEWL 53
                              78*****************************.************986 PP
2Myb_DNA-binding23.99.8e-0861103348
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                WT  Ede+l+++ +++++  W+tIa  +g   t+ qc  r+ k+l
  Peaxi162Scf00304g00074.1  61 EWTRKEDEKLLHLANLMPSQ-WRTIAPVVG--HTPSQCLVRYEKLL 103
                               6*******************.********8..9******9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.863157IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-18556IPR009057Homeodomain-like
SMARTSM007171.7E-14655IPR001005SANT/Myb domain
PfamPF139212.6E-131070No hitNo description
CDDcd001678.93E-111053No hitNo description
SuperFamilySSF466895.08E-1933108IPR009057Homeodomain-like
CDDcd116592.66E-2455104No hitNo description
Gene3DG3DSA:1.10.10.604.8E-1157104IPR009057Homeodomain-like
SMARTSM007171.0E-758105IPR001005SANT/Myb domain
PROSITE profilePS5129411.85758107IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MKVLIKGGVW KNTEDEVLKA LVMKYGKNHW ARISSLLVHK TAKQCKARWY EWLDPSIKKI  60
EWTRKEDEKL LHLANLMPSQ WRTIAPVVGH TPSQCLVRYE KLLDDNENYD LSDDDPRKLR  120
PGEIDPNPES RPACPDPDDM EEDEKEMLFE AWARLANARG KKAKRKSREK QQLEEARRLA  180
SLQERRELRA AGLIDVHQRK RKRSGIDYNA EIPFEKKPPP GFYDVTDEEC TVGLQPKFPY  240
TIEELEGERR VDKEARLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-10422583260Cell division cycle 5-like protein
5xjc_L1e-10422583260Cell division cycle 5-like protein
5yzg_L1e-10422583260Cell division cycle 5-like protein
5z56_L1e-10422583260Cell division cycle 5-like protein
5z57_L1e-10422583260Cell division cycle 5-like protein
5z58_L1e-10422583260Cell division cycle 5-like protein
6ff4_L1e-10422583260Cell division cycle 5-like protein
6ff7_L1e-10422583260Cell division cycle 5-like protein
6icz_L1e-10422583260Cell division cycle 5-like protein
6id0_L1e-10422583260Cell division cycle 5-like protein
6id1_L1e-10422583260Cell division cycle 5-like protein
6qdv_O1e-10422583260Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192775.11e-135PREDICTED: cell division cycle 5-like protein isoform X1
RefseqXP_019232628.11e-137PREDICTED: cell division cycle 5-like protein
SwissprotP929481e-126CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A1J6HZR41e-134A0A1J6HZR4_NICAT; Cell division cycle 5-like protein (Fragment)
TrEMBLA7UP121e-134A7UP12_SOLLC; CDC5-like protein
STRINGSolyc04g009950.2.11e-134(Solanum lycopersicum)
STRINGPGSC0003DMT4000299531e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-110cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]