PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00304g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | LBD | ||||||||
Protein Properties | Length: 174aa MW: 19464 Da PI: 6.8966 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.2 | 2.1e-41 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+l+r+C ++C +apyf +++pkkfanvhk+FGasnv+k+l+++p+++red+++slvyeAe+r++dPvyG++g i +lq+ Peaxi162Scf00304g00004.1 11 SCAACKFLKRRCIPNCQFAPYFRSDEPKKFANVHKVFGASNVIKILNEVPQDQREDTVNSLVYEAEVRLKDPVYGCIGAIASLQR 95 6************************************************************************************ PP DUF260 86 qleqlkaelallkee 100 ++ +l+++l +++++ Peaxi162Scf00304g00004.1 96 KMVELQHDLMVTRAH 110 ********9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.293 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-40 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MKSNEPRSSS SCAACKFLKR RCIPNCQFAP YFRSDEPKKF ANVHKVFGAS NVIKILNEVP 60 QDQREDTVNS LVYEAEVRLK DPVYGCIGAI ASLQRKMVEL QHDLMVTRAH LAYYETKPSS 120 ASCSFLDYDP PNVNVTSAFM DFSASNGLVD TFTQNSFVMD HGGSTNEFGQ LPFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-47 | 6 | 138 | 6 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-47 | 6 | 138 | 6 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 1e-110 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567871.1 | 1e-106 | PREDICTED: LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 4e-59 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A2G2ZWR8 | 1e-106 | A0A2G2ZWR8_CAPAN; LOB domain-containing protein 21 | ||||
STRING | PGSC0003DMT400071281 | 1e-101 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-61 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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