PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00299g00545.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 217aa    MW: 23378 Da    PI: 4.9477
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00299g00545.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.42.3e-14130165134
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++Cg ++  Tp++R gp g+k+LCnaCGl ++kkg
  Peaxi162Scf00299g00545.1 130 CRHCGISSksTPQMRCGPAGPKSLCNACGLVWAKKG 165
                               *****99999************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009790.0087843IPR010399Tify domain
PROSITE profilePS5132011.278843IPR010399Tify domain
PfamPF062001.6E-61841IPR010399Tify domain
SMARTSM004012.7E-10124178IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-10125171No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13128170IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.64E-12129170No hitNo description
PfamPF003203.1E-12130165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEEAAAADSG AYDQVLLSFQ GEIYVFDAVS PQKVEAVLLL LRESQAPATI DYVGPTQSPQ  60
ATADFPQRLN QPKRPPIRKR TRYSVRQHVA RRMQRKKGQF VSSKSVSDEE DSSSADRNEG  120
SDQEEQGTSC RHCGISSKST PQMRCGPAGP KSLCNACGLV WAKKGILRDL LEVPSPGAQD  180
QTVKCGEQNN DEPNGSDSVA AAAIITLDGD DPVVTAD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609389.12e-99PREDICTED: GATA transcription factor 28-like
SwissprotQ8GXL76e-49GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S4B0D63e-93A0A1S4B0D6_TOBAC; GATA transcription factor 24-like
TrEMBLA0A1U7X8553e-93A0A1U7X855_NICSY; GATA transcription factor 24-like
STRINGXP_009609389.18e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2522622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-48ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]