PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00299g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 138aa MW: 15276.3 Da PI: 4.2136 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 22.3 | 1.5e-07 | 2 | 34 | 13 | 45 |
GRAS 13 ssgdlelaqalLarlselaspdgdpmqRlaayf 45 +sg+le+a+ +L ++s+laspdgd+mqR+a+y Peaxi162Scf00299g00019.1 2 ASGSLENANIALDNISHLASPDGDTMQRIASYW 34 6899***************************95 PP | |||||||
2 | GRAS | 90.1 | 3.5e-28 | 53 | 137 | 91 | 179 |
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175 + ++++++Nq I ea+e+e++vHi+D+++ ++lQW aLl+ L++ pegp++lRiTg ++ +ke l ++++ L++ A++l+ p Peaxi162Scf00299g00019.1 53 IVVAFMVTNQVIIEAMEEEKMVHIVDLNAAEPLQWQALLHDLSAHPEGPAHLRITGAHQ----QKEVLDQMAQVLTEEAANLDFP 133 56899******************************************************....9********************* PP GRAS 176 fefn 179 f+fn Peaxi162Scf00299g00019.1 134 FQFN 137 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 17.376 | 1 | 138 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.0E-5 | 2 | 34 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-25 | 53 | 137 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MASGSLENAN IALDNISHLA SPDGDTMQRI ASYWPGLYKA LQLTKLSVVS EDIVVAFMVT 60 NQVIIEAMEE EKMVHIVDLN AAEPLQWQAL LHDLSAHPEG PAHLRITGAH QQKEVLDQMA 120 QVLTEEAANL DFPFQFNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-20 | 1 | 136 | 30 | 192 | Protein SCARECROW |
5b3h_A | 6e-20 | 1 | 136 | 29 | 191 | Protein SCARECROW |
5b3h_D | 6e-20 | 1 | 136 | 29 | 191 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 5e-77 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
GenBank | HG975524 | 5e-77 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004252879.1 | 1e-69 | scarecrow-like protein 3 | ||||
Refseq | XP_015061792.1 | 1e-69 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 2e-53 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A3Q7JDZ1 | 3e-68 | A0A3Q7JDZ1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g099900.1.1 | 5e-69 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16041 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 8e-56 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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