PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00298g00105.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 453aa    MW: 50309.2 Da    PI: 7.5677
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00298g00105.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.61e-35481901128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                               lp+G++F+Ptd+el+ e+L++kv +k+      ++++   i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+
  Peaxi162Scf00298g00105.1  48 LPAGVKFDPTDQELI-EHLEAKVLAKEskshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRK 130
                               799************.99****999996665443333333666646**********.555666799******************7 PP

                       NAM  78 tk........sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               ++        + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Peaxi162Scf00298g00105.1 131 IQtecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 190
                               3334555544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-3944209IPR003441NAC domain
PROSITE profilePS5100533.5548209IPR003441NAC domain
PfamPF023653.3E-1649190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MNKSSHQLGS ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE GKPDWVGLPA GVKFDPTDQE  60
LIEHLEAKVL AKESKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTECDLQGG ETRWHKTGKT RPVMVNGKQK GCKKILVLYT NFGKNRKPEK  180
TNWVMHQYHL GQHEEEKEGE LVVSKIFYQT QPRQCNWTHE RSNTSSTAGG GEASSDLNSR  240
RDSGSGSCSS SKDINNIPSH RDELSAAVCA AMSSYSTMDI QQFKADQFSF LPYRKSFDEA  300
GIVAAEGSIS REAGLTTAAP VGTSDQRDIP EPQNPHSHQH QHQHQHQHQH HNQVATAAFH  360
ISRPSPPISA IITPPPLHNT SVILGEDAFH VPRIILPNEN FQQHQQQQHH KLGGRSASEL  420
EQLIMGCTSS TDIKGDTQHS IACMGFCSQK VLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-134619013140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245876.10.0PREDICTED: uncharacterized protein LOC109225605 isoform X2
SwissprotQ9M0F81e-174NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A3Q7GJL50.0A0A3Q7GJL5_SOLLC; Uncharacterized protein
STRINGSolyc05g026180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-160NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]